View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_low_31 (Length: 351)
Name: NF8508_low_31
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 43616562 - 43616228
Alignment:
| Q |
1 |
ctgcaatataccatgagcaactctaattaattcaccacatcataactcatatcaacattagctatataagtcttacagtattccttcatgtaatcaacat |
100 |
Q |
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| T |
43616562 |
ctgcaatataccatgagcaactctaattaattcaccacatcataactcatatcaacattagctatataagtcttacagtattccttcatgtaatcaacat |
43616463 |
T |
|
| Q |
101 |
tctctttacgaataaaatttttatattacttttctgtaatgaagcttagatgaaaattaatgtggttttccaaaatttacctgagcataacagcaaagaa |
200 |
Q |
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| T |
43616462 |
tctctttacgaataaaatttttatattacttttctgtaatgaagcttagatgaaaattaatgtggttttccaaaatttacctgagcataacagcaaagaa |
43616363 |
T |
|
| Q |
201 |
gaatgttgaagccggaagacagttaacaattgcagcagccaacatagcagacgtgtaagcaagagcaataccattcacattcaaagttaaagtaattctg |
300 |
Q |
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| T |
43616362 |
gaatgttgaagccggaagacagttaacaattgcagcagccaacatagcagacgtgtaagcaagagcaataccattcacattcaaagttaaagtaattctg |
43616263 |
T |
|
| Q |
301 |
aaaaacaacaaagtaggatcattgacccgattaat |
335 |
Q |
| |
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| T |
43616262 |
aaaaacaacaaagtaggatcatagacccgattaat |
43616228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 157 - 319
Target Start/End: Complemental strand, 43609861 - 43609698
Alignment:
| Q |
157 |
ttaatgtggttttccaaaatttacctgagcataacagcaaagaagaatgttgaagccggaagacagttaacaattgcagcagccaacatagcagacgtgt |
256 |
Q |
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| T |
43609861 |
ttaatgtggttttcaaaaatttacctgagcagaacagcaaagaagaatgtcgaagccggaagacaattaacaattgcaccagacagcatagcagaagtat |
43609762 |
T |
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| Q |
257 |
aagcaagagcaataccattcacattcaaagttaaagtaattctgaaaaa-caacaaagtaggat |
319 |
Q |
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| T |
43609761 |
aagaaagagcaacaccatgcacattcagagttaaagtaagtctgaaaaagcaaccaagtaggat |
43609698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 149 - 319
Target Start/End: Complemental strand, 43603461 - 43603290
Alignment:
| Q |
149 |
gatgaaaattaatgtgg-ttttccaaaatttacctgagcataacagcaaagaagaatgttgaagccggaagacagttaacaattgcagcagccaacatag |
247 |
Q |
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||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||| |||| ||||| || |||||||| |||||||||||| || |
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| T |
43603461 |
gatgaaaattaatgttgattttccaaaatttacctgagcagaacagcaaagaagaatgtacaagcaggaaggcaattaacaatagcagcagccaacgaag |
43603362 |
T |
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| Q |
248 |
cagacgtgtaagcaagagcaataccattcacattcaaagttaaagtaattctgaaaaacaacaaagtaggat |
319 |
Q |
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| T |
43603361 |
cagaagtgtaaacaagggcaataccatgcacattcagagctaaagtaattctgaaaagcaaccaagaaggat |
43603290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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