View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8508_low_32 (Length: 347)
Name: NF8508_low_32
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_32 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 5287171 - 5286844
Alignment:
| Q |
1 |
ggaaattggagcttgggacaaaggcaattgttttgtcttggaagagttctacttaagagaaacagaattcttgttctggatgaagcaacagcatccattg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5287171 |
ggaaattggagcttgggacaaaggcaattgttttgccttggaagagttctacttaagagaaacagaattcttgttctggatgaagcaacagcatccattg |
5287072 |
T |
|
| Q |
101 |
actctgcgacggatgcaattctacaaagagtaattagacaagaattttcagaatgcacagttataactgtggctcacagagttccaactgtaatagacag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5287071 |
actctgcgacggatgcaattctacaaagagtaattagacaagaattttcagaatgcacagttataactgtggctcacagagttccaactgtaatagacag |
5286972 |
T |
|
| Q |
201 |
tgacatggtcatggtcctatcttatggtatatgttatttccttaatcttctctacttttgttttctatttttgcctcataattttttgctggtttattaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5286971 |
tgacatggtcatggtcctatcttatgg--tatgttatttccttaatcttctctacttttgttttctatttttgcctcataattttttgctggtttattaa |
5286874 |
T |
|
| Q |
301 |
agggaaacttgtggaatatgatgagccttc |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
5286873 |
agggaaacttgtggaatatgatgagccttc |
5286844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 330
Target Start/End: Original strand, 5310003 - 5310332
Alignment:
| Q |
1 |
ggaaattggagcttgggacaaaggcaattgttttgtcttggaagagttctacttaagagaaacagaattcttgttctggatgaagcaacagcatccattg |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || || || |||| |
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|
| T |
5310003 |
ggaaattggagcttgagacaaaggcaattgttttgtcttggaagagttctacttaagagaaacaaaattcttgttctggatgaagctactgcctctattg |
5310102 |
T |
|
| Q |
101 |
actctgcgacggatgcaattctacaaagagtaattagacaagaattttcagaatgcacagttataactgtggctcacagagttccaactgtaatagacag |
200 |
Q |
| |
|
||||| | || |||||||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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|
| T |
5310103 |
actcttccacagatgcaatactacaaagagtaattagacaagaatttgcagaatgcacagtcataactgtggctcacagagttccaactgtcatagacag |
5310202 |
T |
|
| Q |
201 |
tgacatggtcatggtcctatcttatggtatatgttatttccttaatcttctctacttttgttttctatttttgcctcataattttttgctggt--ttatt |
298 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||| ||||| ||||| |
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|
| T |
5310203 |
tgacatggtcatggtcctatcttatgg--tatgttatttccttattcttctatacttttgttttctatttttgcctcgtaatttttttctggttattatt |
5310300 |
T |
|
| Q |
299 |
aaagggaaacttgtggaatatgatgagccttc |
330 |
Q |
| |
|
| |||||||||||||||||||||||||||||| |
|
|
| T |
5310301 |
atagggaaacttgtggaatatgatgagccttc |
5310332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 5316651 - 5316880
Alignment:
| Q |
1 |
ggaaattggagcttgggacaaaggcaattgttttgtcttggaagagttctacttaagagaaacagaattcttgttctggatgaagcaacagcatccattg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||| || || ||||||| |
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|
| T |
5316651 |
ggaaattggagcttgggacaaaggcaattgttttgtcttggaagagttctacttaagaggaacaggattctagttctggatgaagctactgcctccattg |
5316750 |
T |
|
| Q |
101 |
actctgcgacggatgcaattctacaaagagtaattagacaagaattttcagaatgcacagttataactgtggctcacagagttccaactgtaatagacag |
200 |
Q |
| |
|
||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||||| |||||||||||||||| || |
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|
| T |
5316751 |
actctgccacagatgccattctacaaagagtaattagacaagaattttcagaatgcacggttataaccgttgctcacagaattccaactgtaatagatag |
5316850 |
T |
|
| Q |
201 |
tgacatggtcatggtcctatcttatggtat |
230 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |
|
|
| T |
5316851 |
tgacatggtcatggtcttatcttatggtat |
5316880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 5279444 - 5279215
Alignment:
| Q |
1 |
ggaaattggagcttgggacaaaggcaattgttttgtcttggaagagttctacttaagagaaacagaattcttgttctggatgaagcaacagcatccattg |
100 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||| |||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5279444 |
ggaaattggagcttaggacagcggcaactgttttgccttggaagagttctacttaaaagaaatagaattcttgttctagatgaagcaacagcatccattg |
5279345 |
T |
|
| Q |
101 |
actctgcgacggatgcaattctacaaagagtaattagacaagaattttcagaatgcacagttataactgtggctcacagagttccaactgtaatagacag |
200 |
Q |
| |
|
|||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5279344 |
actcagccacagatgcaattctacaaagagtaattagacaagaattcgaagaatgcacagttataactgtggctcacagagttccaactgtaatagacag |
5279245 |
T |
|
| Q |
201 |
tgacatggtcatggtcctatcttatggtat |
230 |
Q |
| |
|
||||||||| ||||| ||||||||||||| |
|
|
| T |
5279244 |
tgacatggttctggtcttatcttatggtat |
5279215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 15128635 - 15128883
Alignment:
| Q |
1 |
ggaaattggagcttgggacaaaggcaattgttttgtcttggaagagttctacttaagagaaacagaattcttgttctggatgaagcaacagcatccattg |
100 |
Q |
| |
|
||||||||||||||||||||| | ||||| ||||| || ||||||||||||||||| || ||||||||||||||| |||||||||| || |||||||||| |
|
|
| T |
15128635 |
ggaaattggagcttgggacaacgccaattattttgcctcggaagagttctacttaaaaggaacagaattcttgttttggatgaagctactgcatccattg |
15128734 |
T |
|
| Q |
101 |
actctgcgacggatgcaattctacaaagagtaattagacaagaattttcagaatgcacagttataactgtggctcacagagttccaactgtaatagacag |
200 |
Q |
| |
|
| || || || ||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15128735 |
attcagccacagatgcgattctacaaagaataattagacaagaatttgaagaatgcacagttataactgttgctcacagagttccaactgtaatagacag |
15128834 |
T |
|
| Q |
201 |
tgacatggtcatggtcctatcttatggtatatgttatttccttaatcttct |
251 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||| ||||||| |||||| |
|
|
| T |
15128835 |
tgacatggtcatggttctatcttatgg--tatgttaattccttattcttct |
15128883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 14946445 - 14946112
Alignment:
| Q |
1 |
ggaaattggagcttgggacaaaggcaattgttttgtcttggaagagttctacttaagagaaacagaattcttgttctggatgaagcaacagcatccattg |
100 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||| || |||||||||||||||||||| |||| |||||||||| |||| ||||| || |||||||||| |
|
|
| T |
14946445 |
ggaaattggagcttgggacaacgccaattgttttgcctcggaagagttctacttaagaggaacaaaattcttgttttggacgaagctactgcatccattg |
14946346 |
T |
|
| Q |
101 |
actctgcgacggatgcaattctacaaagagtaattagacaagaattttcagaatgcacagttataactgtggctcacagagttccaactgtaatagacag |
200 |
Q |
| |
|
| || || || ||||| |||||||||||| |||| |||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14946345 |
attcagccacagatgccattctacaaagaataatcagacaagagtttgaagaatgcacagttataactgttgctcacagagttccaactgtaatagacag |
14946246 |
T |
|
| Q |
201 |
tgacatggtcatggtcctatcttatggtatatgttatttccttaatcttctctacttttgttttctatt-------tttgcctcataattttttgctggt |
293 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||| | |||| | ||||| ||| ||| | || |||||||||||| || || |
|
|
| T |
14946245 |
tgacatggtcatggtcctatcttatgg--tatgttaattccttattattctttgcttttatttcctagtaatatccattccctcataattttcggccgg- |
14946149 |
T |
|
| Q |
294 |
ttattaaagggaaacttgtggaatatgatgagccttc |
330 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
14946148 |
ttattaaagggaaactggtggaatatgatgaaccttc |
14946112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 5348127 - 5347901
Alignment:
| Q |
3 |
aaattggagcttgggacaaaggcaattgttttgtcttggaagagttctacttaagagaaacagaattcttgttctggatgaagcaacagcatccattgac |
102 |
Q |
| |
|
|||||||||| |||| ||||| ||||||||||| ||||||||||| || ||||| ||||| | |||||| ||| |||||||||| || || || ||||| |
|
|
| T |
5348127 |
aaattggagcatgggccaaagacaattgttttgccttggaagagtccttcttaaaagaaataaaattctagttttggatgaagctactgcctctattgat |
5348028 |
T |
|
| Q |
103 |
tctgcgacggatgcaattctacaaagagtaattagacaagaattttcagaatgcacagttataactgtggctcacagagttccaactgtaatagacagtg |
202 |
Q |
| |
|
||||| || ||||| |||||||||| | ||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||| || ||||||| |
|
|
| T |
5348027 |
tctgccacagatgctattctacaaaaaataattagacaagaatttgcagaatgcacagttataactgtagctcatagagttccaactgttattgacagtg |
5347928 |
T |
|
| Q |
203 |
acatggtcatggtcctatcttatggta |
229 |
Q |
| |
|
| ||||||||||| || |||||||||| |
|
|
| T |
5347927 |
atatggtcatggttctttcttatggta |
5347901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 271 - 330
Target Start/End: Complemental strand, 5279145 - 5279084
Alignment:
| Q |
271 |
ttgcctcataattttttgctggt--ttattaaagggaaacttgtggaatatgatgagccttc |
330 |
Q |
| |
|
|||||||||||||||| |||||| | |||||||||||||| |||||||||||||||||||| |
|
|
| T |
5279145 |
ttgcctcataatttttggctggtcataattaaagggaaactggtggaatatgatgagccttc |
5279084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 274 - 330
Target Start/End: Original strand, 15128915 - 15128970
Alignment:
| Q |
274 |
cctcataattttttgctggtttattaaagggaaacttgtggaatatgatgagccttc |
330 |
Q |
| |
|
|||| |||||||| |||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
15128915 |
cctcgtaatttttggctggttt-ttaaagggaaactggtggaatatgatgagccttc |
15128970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 271 - 330
Target Start/End: Original strand, 5316949 - 5317010
Alignment:
| Q |
271 |
ttgcctcataattttttgctggt--ttattaaagggaaacttgtggaatatgatgagccttc |
330 |
Q |
| |
|
|||||||||||||||| |||||| | |||||||||||| | ||||||||||||||||||| |
|
|
| T |
5316949 |
ttgcctcataatttttggctggtcataattaaagggaaagtgatggaatatgatgagccttc |
5317010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 301 - 330
Target Start/End: Original strand, 5299420 - 5299449
Alignment:
| Q |
301 |
agggaaacttgtggaatatgatgagccttc |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
5299420 |
agggaaacttgtggaatatgatgagccttc |
5299449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 31523613 - 31523358
Alignment:
| Q |
1 |
ggaaattggagcttgggacaaaggcaattgttttgtcttggaagagttctacttaagagaaacagaattcttgttctggatgaagcaacagcatccattg |
100 |
Q |
| |
|
|||||||||||||| || || | ||| ||||||||||||||||||| ||||| ||||| |||| |||| | ||||| |||||||| ||||| ||||||| |
|
|
| T |
31523613 |
ggaaattggagcttagggcagcgccaactgttttgtcttggaagagtactactcaagaggaacaaaattttagttctagatgaagctacagcctccattg |
31523514 |
T |
|
| Q |
101 |
actctgcgacggatgcaattctacaaagagtaattagacaagaattttcagaatgcacagttataactgtggctcacagagttccaactgtaatagacag |
200 |
Q |
| |
|
||||||| || ||||| |||||||||||||||||||||||||||||| |||||||||| || ||||| | ||||||||| ||||||||||||||||||| |
|
|
| T |
31523513 |
actctgccacagatgccattctacaaagagtaattagacaagaatttgcagaatgcactgtaataaccattgctcacagaattccaactgtaatagacag |
31523414 |
T |
|
| Q |
201 |
tgacatggtcatggtcctatcttatggtatatgttatttccttaatcttctctacttt |
258 |
Q |
| |
|
||||||||||||| ||||||||||||| |||||| ||||||| |||| |||||||| |
|
|
| T |
31523413 |
tgacatggtcatgatcctatcttatgg--tatgttgattccttattcttttctacttt |
31523358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 298 - 330
Target Start/End: Complemental strand, 31523164 - 31523132
Alignment:
| Q |
298 |
taaagggaaacttgtggaatatgatgagccttc |
330 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
31523164 |
taaagggaaactggtggaatatgatgagccttc |
31523132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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