View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_low_33 (Length: 345)
Name: NF8508_low_33
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_33 |
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Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 7329635 - 7329948
Alignment:
| Q |
18 |
atgattttatcttatgagttagaatctgtttgtttaggatgtattgacacttctctagaaaaggtttgctttagtagcgacaatagcgatgcaacacaac |
117 |
Q |
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| T |
7329635 |
atgattttatcttatgagttagaatctgtttgtttaggatgtattgacacttctctagaaaaggtttgctttagtagcgacaatagcaatgcaacacaac |
7329734 |
T |
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| Q |
118 |
aatattctataaatctgatcacaaagtctgatgcatccagttctgatttaaggtcatgtaactaatgaatctgaaatgaatgaaatgagctttggaaact |
217 |
Q |
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| T |
7329735 |
aatattctataaatctgatcacaaagtctgatgcatccagttctgatttaaggtcatgtaactaatgaatctgaaatgaatgaaatgaactttggaaact |
7329834 |
T |
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| Q |
218 |
tgagaatgaggaaaactctattatgaaattaccactgcagtacatatctgatagttccaagcactacagtttgcaacttgttggcatgttataagatgct |
317 |
Q |
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| T |
7329835 |
tgagaatgaggaaaactctattaggaaattaccactgcagtacatatctgatagttccaagcactacagtttgcaacttgttggcatattataagatgct |
7329934 |
T |
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| Q |
318 |
ataaacttgagaat |
331 |
Q |
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|||||||||||||| |
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| T |
7329935 |
ataaacttgagaat |
7329948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 26 - 247
Target Start/End: Complemental strand, 7310334 - 7310115
Alignment:
| Q |
26 |
atcttatgagttagaatctgtttgtttaggatgtattgacacttctctagaaaaggtttgctttagtagcgacaatagcgatgcaacacaacaatattct |
125 |
Q |
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| T |
7310334 |
atcttctgagttagaatctgtttgtttaggatgtattgacacttatctcgaaaagttttgctttagttgcgacaatagcgatgca---caacaatattct |
7310238 |
T |
|
| Q |
126 |
ataaatctgatcacaaagtctgatgcatccagttctgatttaaggtcatgtaactaatgaatctg-aaatgaatgaaatgagctttggaaacttgagaat |
224 |
Q |
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| T |
7310237 |
ataaatctgatcacaaagtctgatgcatccagttctgatttagggtcatgttactgatgcatctgaaaatgaattagaagaacttcggaaacttgagaaa |
7310138 |
T |
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| Q |
225 |
gaggaaaactctattatgaaatt |
247 |
Q |
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| T |
7310137 |
ggggaaaactttattatcaaatt |
7310115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 193
Target Start/End: Complemental strand, 7300924 - 7300846
Alignment:
| Q |
113 |
acaacaatattctataaatctgatcacaaagtctgatgcatccagttctgatttaaggtcatgtaactaatgaatctgaaa |
193 |
Q |
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| T |
7300924 |
acaacaacattctgtaaatttgatcgca--gtctgatgcatccagttctgatttagggtcatgttactaatgcatccgaaa |
7300846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 22482321 - 22482274
Alignment:
| Q |
197 |
atgaaatgagctttggaaacttgagaatgaggaaaactctattatgaa |
244 |
Q |
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| T |
22482321 |
atgaaatgagctttggaaagttaagaatcgggaaaactctattatgaa |
22482274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 303
Target Start/End: Complemental strand, 7310079 - 7310039
Alignment:
| Q |
263 |
atctgatagttccaagcactacagtttgcaacttgttggca |
303 |
Q |
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||||||| ||||||||||||||| |||| |||||||||||| |
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| T |
7310079 |
atctgattgttccaagcactacattttgtaacttgttggca |
7310039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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