View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_low_35 (Length: 333)
Name: NF8508_low_35
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_35 |
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| [»] scaffold0133 (1 HSPs) |
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| [»] scaffold0256 (1 HSPs) |
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Alignment Details
Target: scaffold0133 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0133
Description:
Target: scaffold0133; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 14375 - 14303
Alignment:
| Q |
183 |
ttattataataaaactaacgttaagacgaatagtccttaaaaattgaggttctgtctagagtattaaagaaag |
255 |
Q |
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| T |
14375 |
ttattataataaaactaacattaagacgaatagtccttaaaagttgaggttctgtctagagtattaaagaaag |
14303 |
T |
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Target: chr3 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 126 - 189
Target Start/End: Original strand, 38942226 - 38942289
Alignment:
| Q |
126 |
atcaatgaaactattttgtgataacttgtctgcagtaaatattccaaaaaattatgtttattat |
189 |
Q |
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| T |
38942226 |
atcaatgaaagtattttgtgataacttgtctgcagttagtattccaaaaaattatgtttattat |
38942289 |
T |
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Target: scaffold0256 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 249 - 284
Target Start/End: Complemental strand, 10599 - 10564
Alignment:
| Q |
249 |
aagaaaggatacctattattttgagataaacaatag |
284 |
Q |
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| T |
10599 |
aagaaaggatacctattattttgagataaacaatag |
10564 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 2798448 - 2798412
Alignment:
| Q |
285 |
atgttaaatatcatgcttaggattgctgacgtgtgtg |
321 |
Q |
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| T |
2798448 |
atgttaaatatcatgcttaggactgctgatgtgtgtg |
2798412 |
T |
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