View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_low_41 (Length: 304)
Name: NF8508_low_41
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_41 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 44949249 - 44949534
Alignment:
| Q |
1 |
ttttgcatatgtaacaagttttgccaactggaataaatgcaaaatccccatatccagcacttgtcatctgcatgatctcatcatctaaaaccaaagtttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44949249 |
ttttgcatatgtaacaagttttgccaactggaataaatgcaaaatccccatatccagcacttgtcatctgcatgatctcatcatctaaaaccaaagtttg |
44949348 |
T |
|
| Q |
101 |
caaaatctcctctatttgttttcctgtgacttcagtgttgaagatttcgctctttttaatccactccaaacatccatcacatgtggaaactttatgcatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44949349 |
caaaatctcctctatttgttttcctgtgacttcagtgttgaagatttcgctctttttaatccactccaaacatccatcacatgtggaaactttatgcatg |
44949448 |
T |
|
| Q |
201 |
aaaatgcatttcaagcacaccttctttagagcatctataaaacccatatcaagcttcccatcactataaaaatgcccaccagtgat |
286 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
44949449 |
aaaatgcatttcaagcacaccttctttagagcatctataaaacccgtatcaagcttcccatcactataaaaatgcccaccagtgat |
44949534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 74 - 275
Target Start/End: Original strand, 44943533 - 44943734
Alignment:
| Q |
74 |
gatctcatcatctaaaaccaaagtttgcaaaatctcctctatttgttttcctgtgacttcagtgttgaagatttcgctctttttaatccactccaaacat |
173 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||| |
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| T |
44943533 |
gatctcatcatctaaaaccaaagtttgcaaaatctcctctatttgttttcctgtgacttcagaattgaagattccactctttttaatccactccaaacat |
44943632 |
T |
|
| Q |
174 |
ccatcacatgtggaaactttatgcatgaaaatgcatttcaagcacaccttctttagagcatctataaaacccatatcaagcttcccatcactataaaaat |
273 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||| |||| |||||||||| |||||| ||| || ||||||| |||||||||| |||||||| |
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| T |
44943633 |
ccattacatgtggaaactttctgcatgaaaatgcatttcaagtacacattctttagagtatctatcaaaaccgtatcaagtttcccatcaccataaaaat |
44943732 |
T |
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| Q |
274 |
gc |
275 |
Q |
| |
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|| |
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| T |
44943733 |
gc |
44943734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 6470098 - 6470380
Alignment:
| Q |
1 |
ttttgcatatgtaacaagttttgccaactggaataaatgcaaaatccccatatccagcacttgtcatctgcatgatctcatcatctaaaaccaaagtttg |
100 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
6470098 |
ttttgcatatgtaacaagttttgccaacaggaatagatgcaaaatccccatatccagtacttgtcatctgcattatctcatcatctaaaaccaaagtttg |
6470197 |
T |
|
| Q |
101 |
caaaatctcctctatttgttttcctgtgacttcagtgttgaagatttcgctctttttaatccactccaaacatccatcacatgtggaaactttatgcatg |
200 |
Q |
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|||||||| |||||||||| ||| ||||||| ||| |||||| | ||| |||||| ||||||||||||||||||||||||||||||| | | || |
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| T |
6470198 |
taaaatctcttctatttgttctcccgtgacttgagttgtgaagaccccactccttttaacccactccaaacatccatcacatgtggaaactctctccaat |
6470297 |
T |
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| Q |
201 |
aaaatgcatttcaagcacaccttctttagagcatctataaaacccatatcaagcttcccatcactataaaaatgcccaccagt |
283 |
Q |
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||||||||| || |||| | ||||||||| ||||||||| || ||||||| |||| ||||| ||||||||||||||||| |
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| T |
6470298 |
gaaatgcattgcaggcacgtttgctttagagcgtctataaaaaccgtatcaagactcccttcactgtaaaaatgcccaccagt |
6470380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 419586 - 419304
Alignment:
| Q |
1 |
ttttgcatatgtaacaagttttgccaactggaataaatgcaaaatccccatatccagcacttgtcatctgcatgatctcatcatctaaaaccaaagtttg |
100 |
Q |
| |
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|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
419586 |
ttttgcatatgtaacaagttttgccaacgggaatagatgcaaaatccccatatccagtacttgtcatctgcatgatctcatcgtctaaaaccaaagtttg |
419487 |
T |
|
| Q |
101 |
caaaatctcctctatttgttttcctgtgacttcagtgttgaagatttcgctctttttaatccactccaaacatccatcacatgtggaaactttatgcatg |
200 |
Q |
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||||||||| |||||||| | ||| ||||||| ||| |||||| | |||||||||| ||||||||||||||||||||||||||||||| | || | |
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| T |
419486 |
caaaatctcttctatttggtctcccgtgacttgagttgtgaagaccccactctttttaacccactccaaacatccatcacatgtggaaactctctgtaat |
419387 |
T |
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| Q |
201 |
aaaatgcatttcaagcacaccttctttagagcatctataaaacccatatcaagcttcccatcactataaaaatgcccaccagt |
283 |
Q |
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||||||||| ||||||| ||||||||||||||||||||| || ||||||| |||| || || ||||||||||||||||| |
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| T |
419386 |
gaaatgcattgcaagcacgttttctttagagcatctataaaaaccgtatcaagactcccttcgctgtaaaaatgcccaccagt |
419304 |
T |
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