View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8508_low_42 (Length: 298)

Name: NF8508_low_42
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8508_low_42
NF8508_low_42
[»] chr3 (3 HSPs)
chr3 (1-298)||(43616734-43617031)
chr3 (200-298)||(43603700-43603798)
chr3 (200-298)||(43610109-43610206)


Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 43617031 - 43616734
Alignment:
Q  1 cttagttgtgagaatttgacattgtaacctttaggaaaagaaattcaaatttcatgttgtaaaattgtcattactctcacttcaattaataattattttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43617031 cttagttgtgagaatttgacattgtaacctttaggaaaagaaattcaaatttcatgttgtaaaattgtcattactctcacttcaattaataattattttt 43616932  T
Q  101 ctgttcactaaattttgttnnnnnnnttatcgataacgcagagaattcataatgtaacacaaatgttttcatcattctagaccttataccgcaaattgaa 200  Q
    |||||||||||||||||||       ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  43616931 ctgttcactaaattttgttaaaaaaattatccatgacgcagagaattcataatgtaacacaaatgttttcatcattctagaccttataccacaaattgaa 43616832  T
Q  201 attaaattaatggtacctgaagtacaagccacaagctccacatgatggtgcctaggaacaagagtaaagcacccaaaatccattttttgtcatatgat 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43616831 attaaattaatggtacctgaagtacaagccacaagctccacatgatggtgcctaggaacaagagtaaagcacccaaaatccattttttgtcatatgat 43616734  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 200 - 298
Target Start/End: Complemental strand, 43603798 - 43603700
Alignment:
Q  200 aattaaattaatggtacctgaagtacaagccacaagctccacatgatggtgcctaggaacaagagtaaagcacccaaaatccattttttgtcatatgat 298  Q
    |||||||| || |||||||||| ||||| |||||| ||||||||||  ||| ||||||||||||| |||| |||||||||||||||||| |||| ||||    
T  43603798 aattaaataaacggtacctgaaatacaatccacaaactccacatgactgtggctaggaacaagaggaaagaacccaaaatccattttttctcatgtgat 43603700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 200 - 298
Target Start/End: Complemental strand, 43610206 - 43610109
Alignment:
Q  200 aattaaattaatggtacctgaagtacaagccacaagctccacatgatggtgcctaggaacaagagtaaagcacccaaaatccattttttgtcatatgat 298  Q
    |||||||||| || |||||||||||||| |||||| |||||  | |||||   ||||||||||||||||| ||||||||||||||||||||||||||||    
T  43610206 aattaaatta-tgctacctgaagtacaatccacaaactccaggtaatggtagttaggaacaagagtaaagaacccaaaatccattttttgtcatatgat 43610109  T

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