View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_low_44 (Length: 295)
Name: NF8508_low_44
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_44 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 295
Target Start/End: Original strand, 13944770 - 13945050
Alignment:
| Q |
13 |
attattctatgtatataaattcatttatatgtctatttcaactcatctctactatttaacattattatgagatacaatcatttagtttaatcagttttgt |
112 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
13944770 |
attattctatgtttataaattcatttatatgtctatttcaactcatctctactatttaacatta---tgagatacaatcatttagtttaatcagttttgt |
13944866 |
T |
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| Q |
113 |
cattgattcttgtggtgtgttaaatgaccacgtgaatagtgagaacttatttcctttcgtgaaaagtttttggaaatttatactttaagtatagatgatt |
212 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13944867 |
cattgattcttgtggtgtgttaaatgacgacgtgaatagtgagaacttatttcctttcgtgaaaagtttttggaaatttatactttaagtatagatgatt |
13944966 |
T |
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| Q |
213 |
acctccttaaactacaaattattagatattacactttca-nnnnnnnnngaaggggagatattatactttcatgtttagcatgt |
295 |
Q |
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||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13944967 |
acctccttaaactacaaattattagatattatactttcattttttttttgaaggggagatattatactttcatgtttagcatgt |
13945050 |
T |
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