View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_low_46 (Length: 289)
Name: NF8508_low_46
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 14 - 281
Target Start/End: Complemental strand, 52341119 - 52340861
Alignment:
| Q |
14 |
cagtttttcatgtcataaatattgaacgaattcctcattttcaatgccaataaatctataaaagtatctcgtccatagtttgtagggacattgtgacata |
113 |
Q |
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| T |
52341119 |
cagtttttcgtgtcataaatattgaacgaattcctcattttcaatgtcaataaatctataaaagtatctcgtccatagtttgtagggacattgtgacata |
52341020 |
T |
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| Q |
114 |
caagggttggggtttgaaccctgaatttctcacttattcactttcagggagaatatttaatcgctaggctacttgattaaaaataaaaactataagagnn |
213 |
Q |
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| T |
52341019 |
caagggtcagggtttgaaccctgaatttctcacttattcactttcagggtgaatatttaatcgctaggctacttgattaaaaataaaaactat------- |
52340927 |
T |
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| Q |
214 |
nnnnnnnattaaaataaaagtatctattttaatataaataaccaaacaatcatttaaacattcatctc |
281 |
Q |
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| T |
52340926 |
--tttttattaaaataaaagtatctattttaatataagtaaccaaacaatcatttaaacattcatctc |
52340861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 18 - 206
Target Start/End: Complemental strand, 1361050 - 1360863
Alignment:
| Q |
18 |
ttttcatgtcataaatattgaacgaattcctcattttcaatgccaataaatctataaaagtatctcgtccatagtttgtagggacattgtgacatacaag |
117 |
Q |
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| T |
1361050 |
ttttcatgtcataatttttgaatgattttctcattttcaatgccaataaaactataaaa-tatctcgtccgcaattggtaggaacattgcgatatacaag |
1360952 |
T |
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| Q |
118 |
ggttggggtttgaaccctgaatttctcacttattcactttcagggagaatatttaatcgctaggctacttgattaaaaataaaaactat |
206 |
Q |
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| T |
1360951 |
ggtcgaggtttaaaccccgaattcctcacatattcaccttaagggtgaatatttagtcattaaactacttaattaaaaataaaaactat |
1360863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 281
Target Start/End: Complemental strand, 1360823 - 1360764
Alignment:
| Q |
222 |
ttaaaataaaagtatctattttaatataaataaccaaacaatcatttaaacattcatctc |
281 |
Q |
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| T |
1360823 |
ttaatataaaagtgtctatttctatataagtaaccaaacaattatttaaatattcatctc |
1360764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 16 - 276
Target Start/End: Complemental strand, 10629841 - 10629570
Alignment:
| Q |
16 |
gtttttcatgtcataaatattgaacgaattcctcattttcaatgccaataaatctataaaagtatctcgtccatagtttgtagggacattgtgacataca |
115 |
Q |
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| T |
10629841 |
gtttttcatgttataaatattgaac-atttcctcattttcaatgccaataaaactataaaagtatctcctccacagtttctagggacattgcgatatata |
10629743 |
T |
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| Q |
116 |
agggttggggtttgaaccctgaatttctcacttattcact--------ttcagggagaatatttaatcgctaggctacttgattaaaaataaaaactata |
207 |
Q |
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| T |
10629742 |
agggtcggaggttgaacctcgaattcttcacttgttcactttaaatccttaaggatgaatatttagtcattaggttacttgattaaaaataaaaactatg |
10629643 |
T |
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| Q |
208 |
ag--agnnnnnnnnnattaaaataaaagtatctattttaatataaa--taaccaaacaatcatttaaacattc |
276 |
Q |
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| T |
10629642 |
agtttttttttttttgttaatataaaagtatctatttcaatataaaagtaaccaaacaatcatttaaacattc |
10629570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 32162100 - 32162049
Alignment:
| Q |
227 |
ataaaagtatctattttaatataaataaccaaacaatcatttaaacattcat |
278 |
Q |
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| T |
32162100 |
ataaaagtatctcttttaatataaataatcaaacaatcatttaaacattcat |
32162049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 281
Target Start/End: Original strand, 4451273 - 4451327
Alignment:
| Q |
227 |
ataaaagtatctattttaatataaataaccaaacaatcatttaaacattcatctc |
281 |
Q |
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| T |
4451273 |
ataaaagtatttattttaacatgaataatcaaacaatcatttaaactttcatctc |
4451327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 280
Target Start/End: Complemental strand, 55359653 - 55359599
Alignment:
| Q |
226 |
aataaaagtatctattttaatataaataaccaaacaatcatttaaacattcatct |
280 |
Q |
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| T |
55359653 |
aataaaagtatcatttttaatatatgtaaccaaacaatcgtttaatcattcatct |
55359599 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 10983310 - 10983266
Alignment:
| Q |
227 |
ataaaagtatctattttaatataaataaccaaacaatcatttaaa |
271 |
Q |
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| T |
10983310 |
ataaaagtatccattttaatataaataattgaacaatcatttaaa |
10983266 |
T |
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