View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_low_47 (Length: 289)
Name: NF8508_low_47
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_47 |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 12 - 289
Target Start/End: Complemental strand, 43919778 - 43919501
Alignment:
| Q |
12 |
tgttgatgtatgtgtatgtgtcaatgcttcataggttgtgaatattattgcttatgtttctttctgttgattattatggaatattatatagataaaactt |
111 |
Q |
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| T |
43919778 |
tgttgatgtatgtgtatgtgtcagtgcttcataggttgtgaatattattgcttatgtttctttctgttgattattatggaatattatatagataaaactt |
43919679 |
T |
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| Q |
112 |
tgttaggttgataagaatgttgattcaatataattaggagatgaagttaatgatacaaatggaaatgagaactatcacgaaactgagctttttgaggaca |
211 |
Q |
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| T |
43919678 |
tgttaggttgataagaatgttgattcaatataattaggagatgaagttaatgatacaaatggaaatgagaactatcatgaaactgagctttttgaggaca |
43919579 |
T |
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| Q |
212 |
ccttagtgattgatggtaaattcaccgaaactgggttggaaattctcgatctgaataatactgagattgtagaggatt |
289 |
Q |
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| T |
43919578 |
ccttagtgattgatgataaattcaccgaaactgggttggaaattctcgatctgaataatactgagattgtagaggatt |
43919501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 36 - 289
Target Start/End: Complemental strand, 53106988 - 53106732
Alignment:
| Q |
36 |
tgcttcataggttgtgaatattattgcttatgtttctttctgttgattattatggaatattat---atagataaaactttgttaggttgataagaatgtt |
132 |
Q |
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| T |
53106988 |
tgcttcatagactgtgaacattattgcttatgtttctttttgttgattattatggaatattattatatagatagaactttgttaggttgataagaatgtt |
53106889 |
T |
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| Q |
133 |
gattcaatataattaggagatgaagttaatgatacaaatggaaatgagaactatcacgaaactgagctttttgaggacaccttagtgattgatggtaaat |
232 |
Q |
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| T |
53106888 |
gattcaacatgattaggagatgaagttaatgatgcaaatagcgatgagaattatcaggaaactgagctttttgaggataccttagtgatcaacggtccat |
53106789 |
T |
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| Q |
233 |
tcaccgaaactgggttggaaattctcgatctgaataatactgagattgtagaggatt |
289 |
Q |
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| T |
53106788 |
tcaccgaaattgggttggaaaatctcgatctgaataataccgagattgtagaggatt |
53106732 |
T |
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