View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_low_48 (Length: 285)
Name: NF8508_low_48
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 31194242 - 31193976
Alignment:
| Q |
1 |
gtggaatttataccggagaatgtggaactgagctagaccatggtgttactgctgttggttatggtagtgctaatgggactgattattggattgtgaagaa |
100 |
Q |
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| T |
31194242 |
gtggaatttatacaggagaatgtggaactgagctagaccatggtgttactgctgttggttatggtagtgctaatgggactgattattggattgtgaagaa |
31194143 |
T |
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| Q |
101 |
ttcatggggcactgtgtggggtgaaaaagggtacataagaatgcaaagaggtatagctgataaggaaggcttatgtggtattgcaatggattcttcttat |
200 |
Q |
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| T |
31194142 |
ttcatggggcactgtgtggggtgagaaagggtacataaggatgcaaagaggtatagctgataaggaaggcttatgtggtattgcaatggattcttcttat |
31194043 |
T |
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| Q |
201 |
ccaactgcttaacctgttgaattatgtaacttgtgtctcaagcttgtattttaacaacattaaatat |
267 |
Q |
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| T |
31194042 |
ccaactgcttaacctgttgaattatgtaacttgtgtctcaagcttgtattttaacaacattaaatat |
31193976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 31185415 - 31185164
Alignment:
| Q |
1 |
gtggaatttataccggagaatgtggaactgagctagaccatggtgttactgctgttggttatggtagtgctaatgggactgattattggattgtgaagaa |
100 |
Q |
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| T |
31185415 |
gtggaatttatacaggagaatgtggaactgagctagatcatggtgtcactgctgttggatatggtagtgctaatggtactgattattggattgtgaagaa |
31185316 |
T |
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| Q |
101 |
ttcatggggcactgtgtggggtgaaaaagggtacataagaatgcaaagaggtatagctgataaggaaggcttatgtggtattgcaatggattcttcttat |
200 |
Q |
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| T |
31185315 |
ttcatggggcactgtgtggggtgaaaaagggtacataaggatgcaaagaggtatagctgctaaggaaggcttatgtggtattgccatggattcttcttat |
31185216 |
T |
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| Q |
201 |
ccaactgcttaacctgttgaattatgtaacttgtgtctcaagcttgtatttt |
252 |
Q |
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| T |
31185215 |
ccaactgcttaaattatccagttatgtaacttgtgtctcaagcttgtatttt |
31185164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 148
Target Start/End: Original strand, 31727565 - 31727636
Alignment:
| Q |
77 |
gactgattattggattgtgaagaattcatggggcactgtgtggggtgaaaaagggtacataagaatgcaaag |
148 |
Q |
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| T |
31727565 |
gactgagtattggttggtgaagaattcatggggaactcaatggggtgaagaagggtacattaggatgcaaag |
31727636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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