View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8508_low_49 (Length: 284)
Name: NF8508_low_49
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_49 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 17 - 284
Target Start/End: Complemental strand, 3878736 - 3878469
Alignment:
| Q |
17 |
gatagaacgtagaccaccattcatgcagtagtactccatctgaagaatcaagcattgaacccataaattccctgcctgtataaaatcaatttccaaggag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3878736 |
gatagaacgtagaccaccattcatgcagtagtactccatctgaagaatcaagcattgaacccataaattccctgcctgtataaaatcaatttccaaggag |
3878637 |
T |
|
| Q |
117 |
atttactacatcaatataaatactaaaaatcaatgaatttccagcaatattcagaataatatataatttgatctaaaagtacatcaaaattaaattcatg |
216 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3878636 |
atttactacatcaatataaatactgaaaatcaatgaatttccagcaatattcagaataatatataatttgatctaaaagtacatcaaaattaaattcatg |
3878537 |
T |
|
| Q |
217 |
attaaaagaacagcagttaattatctcaaggcaagctcatcaatcaatcaattatacaacaatgtacc |
284 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3878536 |
attaaaagaacaacagttaattatctcaaggcaagctcatcaatcaatcaattatacaacaatgtacc |
3878469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University