View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_low_5 (Length: 579)
Name: NF8508_low_5
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 244 - 386
Target Start/End: Original strand, 26187557 - 26187686
Alignment:
| Q |
244 |
gtctcggatacacttgttaacaaactctttatcaaaataataataattcctcaaagcatatgcatcaagaatggaatggagactagcagtagccagtagg |
343 |
Q |
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| T |
26187557 |
gtctcggatacacttgt-aacaaactctttatcaaaataataataattcctcaaagcatatgcatcaagaatggaatggagactagcagtagccagtagg |
26187655 |
T |
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| Q |
344 |
ttcatgccaaagcatcagtaaattaatctcttaactagacttt |
386 |
Q |
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| T |
26187656 |
t------------atcagtaaattaatctcttaactagacttt |
26187686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 492 - 575
Target Start/End: Original strand, 26187793 - 26187876
Alignment:
| Q |
492 |
gtctactcatttaacaacgtaagaagcaaatgattgtgttacttttccatcctccattctcctacacaaattaaacatgttgaa |
575 |
Q |
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| T |
26187793 |
gtctactcatttaacaacgtaagaagcaaatgattgtgttacttttccatcctccattctcatacacaaattaaacatgttgaa |
26187876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 26187421 - 26187470
Alignment:
| Q |
99 |
aaaatgttaactagtgctcccgaagcactgattaaggactttaaatgtta |
148 |
Q |
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| T |
26187421 |
aaaatgttaactagtgcccccgaaacactgattaaggactttaaatgtta |
26187470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 145
Target Start/End: Original strand, 29716727 - 29716777
Alignment:
| Q |
95 |
aaggaaaatgttaactagtgctcccgaagcactgattaaggactttaaatg |
145 |
Q |
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| T |
29716727 |
aagggaaatgttaactagtgcccccggggcactggttaaggactttaaatg |
29716777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 98 - 144
Target Start/End: Complemental strand, 7996848 - 7996802
Alignment:
| Q |
98 |
gaaaatgttaactagtgctcccgaagcactgattaaggactttaaat |
144 |
Q |
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|||||||||||||| | || |||||||| |||||||||||||||||| |
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| T |
7996848 |
gaaaatgttaactattacttccgaagcattgattaaggactttaaat |
7996802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 145
Target Start/End: Original strand, 49421862 - 49421907
Alignment:
| Q |
100 |
aaatgttaactagtgctcccgaagcactgattaaggactttaaatg |
145 |
Q |
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| T |
49421862 |
aaatgttaactagtgctcccggggcactagttaaggactttaaatg |
49421907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 32133658 - 32133707
Alignment:
| Q |
95 |
aaggaaaatgttaactagtgctcccgaagcactgattaaggactttaaat |
144 |
Q |
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| T |
32133658 |
aagggaaatgttaactagtgcccccggagcactggttaaggaatttaaat |
32133707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 144
Target Start/End: Original strand, 25036927 - 25036976
Alignment:
| Q |
95 |
aaggaaaatgttaactagtgctcccgaagcactgattaaggactttaaat |
144 |
Q |
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||||||||||| |||||||||| |||| | |||||||||||| ||||||| |
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| T |
25036927 |
aaggaaaatgtaaactagtgcttccgaggtactgattaaggattttaaat |
25036976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 28639692 - 28639647
Alignment:
| Q |
99 |
aaaatgttaactagtgctcccgaagcactgattaaggactttaaat |
144 |
Q |
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||||||||||||||||||||| | |||||| |||||||||||||| |
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| T |
28639692 |
aaaatgttaactagtgctcccaaggcactggataaggactttaaat |
28639647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 145
Target Start/End: Original strand, 431594 - 431646
Alignment:
| Q |
93 |
ataaggaaaatgttaactagtgctcccgaagcactgattaaggactttaaatg |
145 |
Q |
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|||||| ||||||||||||||||||||| ||| || |||| ||||||||||| |
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| T |
431594 |
ataagggaaatgttaactagtgctcccggggcattggttaaagactttaaatg |
431646 |
T |
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