View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_low_52 (Length: 277)
Name: NF8508_low_52
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_52 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 39036580 - 39036384
Alignment:
| Q |
19 |
tttcctatctccattattgagacataaggagggaaaatttaatgcgatggctaattttaataaaataatagtaatgttttgcagccaatcaataattaaa |
118 |
Q |
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| T |
39036580 |
tttcctatctccattattgagacataaggagggaaaatttaatgcgatggctaattttaataaaataatagtaatgttttgcagccaatcaataattaaa |
39036481 |
T |
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| Q |
119 |
tgtttggacaaatgaaatttgattaaattgataaggatacaactcatgttttgtgtaatgtgcataaggagatacaaattcatgcaacatgtacaag |
215 |
Q |
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| T |
39036480 |
tgtttggacaaatgaaatttgattaaattgataaggatacaactcatgttttgtgtaatgtgcataaggagatacaaattcatgcaacatgtacaag |
39036384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 271
Target Start/End: Complemental strand, 39036372 - 39036337
Alignment:
| Q |
236 |
tttctcccattaaatgaataagccgcttcatctcac |
271 |
Q |
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| T |
39036372 |
tttctcccattaaatgaataagccgcttcatatcac |
39036337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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