View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8508_low_54 (Length: 276)

Name: NF8508_low_54
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8508_low_54
NF8508_low_54
[»] chr5 (2 HSPs)
chr5 (23-220)||(7649736-7649933)
chr5 (218-259)||(7649606-7649647)
[»] chr3 (2 HSPs)
chr3 (105-215)||(35091672-35091783)
chr3 (23-103)||(35091823-35091903)
[»] chr1 (2 HSPs)
chr1 (59-122)||(48505874-48505937)
chr1 (82-122)||(48505811-48505851)
[»] chr2 (2 HSPs)
chr2 (72-122)||(40927916-40927966)
chr2 (66-122)||(27409395-27409451)
[»] chr4 (3 HSPs)
chr4 (58-139)||(52628956-52629036)
chr4 (66-122)||(31979285-31979341)
chr4 (149-215)||(31980626-31980692)
[»] chr6 (1 HSPs)
chr6 (58-121)||(32090714-32090777)


Alignment Details
Target: chr5 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 23 - 220
Target Start/End: Complemental strand, 7649933 - 7649736
Alignment:
Q  23 taattataataaaaggaaattggaattagcaattagaaattggcatgcaatagaatgagaattgaaaccccgattgattttccctttttgttgttgtgtt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  7649933 taattataataaaaggaaattggaattagcaattagaaattggcatgcaatagaatgataattgaaaccccgattgatttttcctttttgttgttgtgtt 7649834  T
Q  123 cttacatgtgtgaatttgatcaactagcttaaaatctttaagtgagattaacgagtattgtgattagtgtgagaaaattagattttaatgaaactcac 220  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7649833 cttacatgtgtgaatttgatcaactagcttaaaatctttacgtgcgattaacgggtattgtgattagtgtgagaaaattagattttaatgaaactcac 7649736  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 7649647 - 7649606
Alignment:
Q  218 cacccctaaaagagaacagtcacatgttaaattagcttattt 259  Q
    ||||||||||||||||||||| |||| ||||| |||||||||    
T  7649647 cacccctaaaagagaacagtcgcatgataaatcagcttattt 7649606  T

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Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 105 - 215
Target Start/End: Complemental strand, 35091783 - 35091672
Alignment:
Q  105 cctttttgttgttgtgttcttacatgtgtgaatttgatcaacta-gcttaaaatctttaagtgagattaacgagtattgtgattagtgtgagaaaattag 203  Q
    ||||||||||||||||||||||||||||||||||||||||| || ||| |||| ||||| || ||||||| | |||||||||||||| |||||||||||     
T  35091783 cctttttgttgttgtgttcttacatgtgtgaatttgatcaattaggctcaaaaactttatgttagattaatgggtattgtgattagtatgagaaaattaa 35091684  T
Q  204 attttaatgaaa 215  Q
     |||||||||||    
T  35091683 gttttaatgaaa 35091672  T

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Target: chr3; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 23 - 103
Target Start/End: Complemental strand, 35091903 - 35091823
Alignment:
Q  23 taattataataaaaggaaattggaattagcaattagaaattggcatgcaatagaatgagaattgaaaccccgattgatttt 103  Q
    |||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||| ||||||||  |||||||||    
T  35091903 taattataataaaagggaactggaattagcaattagaaattgacatgcaatagaatgagaactgaaaccctaattgatttt 35091823  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 122
Target Start/End: Complemental strand, 48505937 - 48505874
Alignment:
Q  59 aaattggcatgcaatagaatgagaattgaaaccccgattgattttccctttttgttgttgtgtt 122  Q
    |||||| |||||||||||||||||||||||||||  |||||||||||| ||||||| |||||||    
T  48505937 aaattgacatgcaatagaatgagaattgaaaccctaattgattttcccattttgtttttgtgtt 48505874  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 122
Target Start/End: Complemental strand, 48505851 - 48505811
Alignment:
Q  82 aattgaaaccccgattgattttccctttttgttgttgtgtt 122  Q
    |||||||||||  |||||||||||||||||||| |||||||    
T  48505851 aattgaaaccctaattgattttccctttttgtttttgtgtt 48505811  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 40927916 - 40927966
Alignment:
Q  72 atagaatgagaattgaaaccccgattgattttccctttttgttgttgtgtt 122  Q
    |||||||||||||||||||||  |||||||||||||||||||| |||||||    
T  40927916 atagaatgagaattgaaaccctaattgattttccctttttgtttttgtgtt 40927966  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 122
Target Start/End: Complemental strand, 27409451 - 27409395
Alignment:
Q  66 catgcaatagaatgagaattgaaaccccgattgattttccctttttgttgttgtgtt 122  Q
    ||||||||||||||| |||||||||||  ||||||||  ||||||||||||||||||    
T  27409451 catgcaatagaatgataattgaaaccctaattgatttaacctttttgttgttgtgtt 27409395  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 139
Target Start/End: Original strand, 52628956 - 52629036
Alignment:
Q  58 gaaattggcatgcaatagaatgagaattgaaaccccgattgattttccctttttgttgttgtgttcttacatgtgtgaattt 139  Q
    ||||||| |||||||| ||||||| ||||||| ||   ||||||||||||||||||| ||||||| ||||||||||| ||||    
T  52628956 gaaattgacatgcaat-gaatgaggattgaaaacctagttgattttccctttttgttattgtgttgttacatgtgtggattt 52629036  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 122
Target Start/End: Original strand, 31979285 - 31979341
Alignment:
Q  66 catgcaatagaatgagaattgaaaccccgattgattttccctttttgttgttgtgtt 122  Q
    ||||||||||||||| |||||||||||  ||||||||  ||||||||||||||||||    
T  31979285 catgcaatagaatgataattgaaaccctaattgatttaacctttttgttgttgtgtt 31979341  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 31980626 - 31980692
Alignment:
Q  149 gcttaaaatctttaagtgagattaacgagtattgtgattagtgtgagaaaattagattttaatgaaa 215  Q
    |||| |||| |||| ||||||| || | |||||||||||||| |||||||||||| |||||||||||    
T  31980626 gcttgaaatatttatgtgagatcaatgtgtattgtgattagtatgagaaaattaggttttaatgaaa 31980692  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 58 - 121
Target Start/End: Original strand, 32090714 - 32090777
Alignment:
Q  58 gaaattggcatgcaatagaatgagaattgaaaccccgattgattttccctttttgttgttgtgt 121  Q
    ||||||| ||||||||||||  | |||||||||||  | ||||||||||||||||||| |||||    
T  32090714 gaaattgacatgcaatagaacaaaaattgaaaccctaactgattttccctttttgttggtgtgt 32090777  T

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