View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8508_low_6 (Length: 579)
Name: NF8508_low_6
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 138 - 573
Target Start/End: Original strand, 16703950 - 16704386
Alignment:
| Q |
138 |
aaggcacatattgtaaggcttgaatacatctcttttagctctaaatcttcactttggctccatgataattgctaataatgaaaaac-aagcaaatagtag |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
16703950 |
aaggcacatattgtaaggcttgaatacatctcttttagctcaaaatcttcactttggctccatgatcattgctaataatgaaaaaccaagcaaatagtag |
16704049 |
T |
|
| Q |
237 |
taaagagatcctaaaaacttaacaaaaggaccaaaataacaattaaaacaaaccttaaagagttggaaatacgagtttcaccaatacaaaattctaacct |
336 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16704050 |
tgaagagatcctaaaaacttaacaaaaggaccaaaataacaattaaaacaaaccttaaagagttagaaatacgagtttcaccaatacaaaattctaacct |
16704149 |
T |
|
| Q |
337 |
acatttttaaaaattccactttatcttttttacatctgttcggttgatgtaaactttcgttgtgtaatgtttttattttctttcgactagtgccataagg |
436 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
16704150 |
acatttttaaaaattccactttatcttttttacatctgctcggttgatgtaaactttcgttgtgcaatgtttttattttctttcgactagtgccataagg |
16704249 |
T |
|
| Q |
437 |
tatgcacttattgaaaattttgtataagtgtatacattgttaattcaaaactcattagttgattcttaagtgtggtttataaaatatacttatgcctcca |
536 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16704250 |
tatgcacttattgaaaattttgtataagtgtatacattgttaactcaaaactcattagttgattcttaagtgtggtttataaaatatacttatgcctcca |
16704349 |
T |
|
| Q |
537 |
aatgttaaaaacttcttatggtgtatgtgttagaatt |
573 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
16704350 |
aatgttaaaaacttcttatggtgtatgtgttaaaatt |
16704386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 16703780 - 16703901
Alignment:
| Q |
18 |
ggcctaagggtagaagatcctaccaaatggacaactaggtcaataccctagggtaaaatgtgagattacagccgtaaccccaagttacgggtgaacgtaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16703780 |
ggcctaagggtagaagatcctaccaaatggacaactaggtcaataccctagggtaaaatgtgagattacagccgtaaccccaagttacgggtgaacgtaa |
16703879 |
T |
|
| Q |
118 |
tctttgttgtttaacgtagtaa |
139 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
16703880 |
tccttgttgtttaacgtagtaa |
16703901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University