View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8508_low_62 (Length: 255)

Name: NF8508_low_62
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8508_low_62
NF8508_low_62
[»] chr2 (3 HSPs)
chr2 (1-222)||(10509090-10509307)
chr2 (202-234)||(15305601-15305633)
chr2 (201-233)||(4026762-4026794)
[»] chr5 (3 HSPs)
chr5 (201-235)||(35445998-35446032)
chr5 (201-234)||(12554407-12554440)
chr5 (202-234)||(16458072-16458104)
[»] chr1 (4 HSPs)
chr1 (201-235)||(17830097-17830131)
chr1 (205-235)||(37473342-37473372)
chr1 (200-233)||(29904704-29904737)
chr1 (205-237)||(15609033-15609065)
[»] chr8 (2 HSPs)
chr8 (201-235)||(1058167-1058201)
chr8 (202-234)||(32976004-32976036)
[»] chr6 (2 HSPs)
chr6 (201-235)||(8147645-8147679)
chr6 (202-234)||(30536422-30536454)
[»] chr4 (3 HSPs)
chr4 (201-235)||(31851397-31851431)
chr4 (201-233)||(42321972-42322004)
chr4 (202-234)||(43505900-43505932)
[»] chr3 (1 HSPs)
chr3 (205-235)||(20880420-20880450)
[»] chr7 (1 HSPs)
chr7 (202-234)||(45806420-45806452)


Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 10509307 - 10509090
Alignment:
Q  1 agaaaacaagttctgaaaagtgaaaaatactatgaatcttttgtcaaacaagagtcatggaagagtactcgtagggatttgaacttgaaggaaggtgact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10509307 agaaaacaagttctgaaaagtgaaaaatactatgaatcttttgtcaaacaagagtcatggaagagtactcgtagggatttgaacttgaaggaaggtgact 10509208  T
Q  101 cccattctcactgtaaatggatctacaatccaacttccgattctatccctgctgatgttaccttcttcaactggaggaaacactacaaggtataacttta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  10509207 cccattctcactgtaaatggatctacaatccaacttccgattctatccctgctgatgttaccttcttcaactggaggaaacactacaaggtataacttt- 10509109  T
Q  201 tttattttatcatttgctataa 222  Q
       |||||||||||||||||||    
T  10509108 ---attttatcatttgctataa 10509090  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 15305633 - 15305601
Alignment:
Q  202 ttattttatcatttgctataaaaatagcttatg 234  Q
    |||||||||||||||||||||||||||||||||    
T  15305633 ttattttatcatttgctataaaaatagcttatg 15305601  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 4026794 - 4026762
Alignment:
Q  201 tttattttatcatttgctataaaaatagcttat 233  Q
    ||||||||||| |||||||||||||||||||||    
T  4026794 tttattttatcttttgctataaaaatagcttat 4026762  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 235
Target Start/End: Complemental strand, 35446032 - 35445998
Alignment:
Q  201 tttattttatcatttgctataaaaatagcttatgt 235  Q
    |||||||||||||||||||||||||||||||||||    
T  35446032 tttattttatcatttgctataaaaatagcttatgt 35445998  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 234
Target Start/End: Complemental strand, 12554440 - 12554407
Alignment:
Q  201 tttattttatcatttgctataaaaatagcttatg 234  Q
    ||||||||||||||| ||||||||||||||||||    
T  12554440 tttattttatcatttactataaaaatagcttatg 12554407  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 16458072 - 16458104
Alignment:
Q  202 ttattttatcatttgctataaaaatagcttatg 234  Q
    |||||||||| ||||||||||||||||||||||    
T  16458072 ttattttatcttttgctataaaaatagcttatg 16458104  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 201 - 235
Target Start/End: Complemental strand, 17830131 - 17830097
Alignment:
Q  201 tttattttatcatttgctataaaaatagcttatgt 235  Q
    |||||||||||||||||||||||||||||||||||    
T  17830131 tttattttatcatttgctataaaaatagcttatgt 17830097  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 235
Target Start/End: Complemental strand, 37473372 - 37473342
Alignment:
Q  205 ttttatcatttgctataaaaatagcttatgt 235  Q
    |||||||||||||||||||||||||||||||    
T  37473372 ttttatcatttgctataaaaatagcttatgt 37473342  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 233
Target Start/End: Complemental strand, 29904737 - 29904704
Alignment:
Q  200 atttattttatcatttgctataaaaatagcttat 233  Q
    |||||||||||| |||||||||||||||||||||    
T  29904737 atttattttatcttttgctataaaaatagcttat 29904704  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 15609065 - 15609033
Alignment:
Q  205 ttttatcatttgctataaaaatagcttatgtct 237  Q
    ||||||| |||||||||||||||||||||||||    
T  15609065 ttttatcttttgctataaaaatagcttatgtct 15609033  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 235
Target Start/End: Original strand, 1058167 - 1058201
Alignment:
Q  201 tttattttatcatttgctataaaaatagcttatgt 235  Q
    |||||||||| ||||||||||||||||||||||||    
T  1058167 tttattttatgatttgctataaaaatagcttatgt 1058201  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 32976036 - 32976004
Alignment:
Q  202 ttattttatcatttgctataaaaatagcttatg 234  Q
    |||||||||| ||||||||||||||||||||||    
T  32976036 ttattttatcttttgctataaaaatagcttatg 32976004  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 235
Target Start/End: Complemental strand, 8147679 - 8147645
Alignment:
Q  201 tttattttatcatttgctataaaaatagcttatgt 235  Q
    ||||||||||| |||||||||||||||||||||||    
T  8147679 tttattttatcttttgctataaaaatagcttatgt 8147645  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 30536454 - 30536422
Alignment:
Q  202 ttattttatcatttgctataaaaatagcttatg 234  Q
    ||||||||||||||||||||| |||||||||||    
T  30536454 ttattttatcatttgctataataatagcttatg 30536422  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 235
Target Start/End: Complemental strand, 31851431 - 31851397
Alignment:
Q  201 tttattttatcatttgctataaaaatagcttatgt 235  Q
    |||||||||||||||| ||||||||||||||||||    
T  31851431 tttattttatcatttgttataaaaatagcttatgt 31851397  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 42321972 - 42322004
Alignment:
Q  201 tttattttatcatttgctataaaaatagcttat 233  Q
    |||||||||||||||| ||||||||||||||||    
T  42321972 tttattttatcatttgttataaaaatagcttat 42322004  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 43505932 - 43505900
Alignment:
Q  202 ttattttatcatttgctataaaaatagcttatg 234  Q
    |||||||||| ||||||||||||||||||||||    
T  43505932 ttattttatcttttgctataaaaatagcttatg 43505900  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 235
Target Start/End: Complemental strand, 20880450 - 20880420
Alignment:
Q  205 ttttatcatttgctataaaaatagcttatgt 235  Q
    |||||||||||||||||||||||||||||||    
T  20880450 ttttatcatttgctataaaaatagcttatgt 20880420  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 234
Target Start/End: Original strand, 45806420 - 45806452
Alignment:
Q  202 ttattttatcatttgctataaaaatagcttatg 234  Q
    |||||||||| ||||||||||||||||||||||    
T  45806420 ttattttatcttttgctataaaaatagcttatg 45806452  T

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