View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_low_78 (Length: 227)
Name: NF8508_low_78
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_78 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 4474285 - 4474059
Alignment:
| Q |
1 |
agtgttcaattcgttcggaaaacgatacattgtcaccgcaagtccaaggttgatggttgagccatttgttaagacatttttgggagttgataaggtgcta |
100 |
Q |
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| T |
4474285 |
agtgttcaattcgttcgggaaacgatacattgtcacggctagtccaaggttgatggttgagccatttgttaagacatttttgggagttgataaggtgcta |
4474186 |
T |
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| Q |
101 |
gggactgaattgatggttacaaaaacaggaagggcaagtgggtttgttaaggaaccaggagttcttgttggtgaacacaagaaagaggcagttatgaaag |
200 |
Q |
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| T |
4474185 |
gggactgaattgatggttacaaaaacaggaagggcaagtgggtttgttaaggaaccaggagttcttgttggtgaacacaagaaagaggcagttatgaaag |
4474086 |
T |
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| Q |
201 |
aatttggaagtgacaatttgcctgatt |
227 |
Q |
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| T |
4474085 |
aatttggaagtgacaatttgcctgatt |
4474059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 2 - 186
Target Start/End: Complemental strand, 24571575 - 24571391
Alignment:
| Q |
2 |
gtgttcaattcgttcggaaaacgatacattgtcaccgcaagtccaaggttgatggttgagccatttgttaagacatttttgggagttgataaggtgctag |
101 |
Q |
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||||||||||| || ||||| || ||| ||||||| || ||||||||||||||||| |||||||||||||||| || ||||||| ||||| ||| | | |
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| T |
24571575 |
gtgttcaattcttttggaaagcgttacgttgtcacggctagtccaaggttgatggtggagccatttgttaagaatttgttgggaggtgatagagtgattg |
24571476 |
T |
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| Q |
102 |
ggactgaa-ttgatggttacaaaaacaggaagggcaagtgggtttgttaaggaaccaggagttcttgttggtgaacacaagaaaga |
186 |
Q |
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| T |
24571475 |
ggactgaacttga-ggtgaccaaatcaggaagggtaactgggtttgttaaggaacctggtgttcttgttggggagctcaagaaaga |
24571391 |
T |
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