View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_low_8 (Length: 513)
Name: NF8508_low_8
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 494
Target Start/End: Complemental strand, 42918022 - 42917529
Alignment:
| Q |
1 |
taggttcatttatcaaactaagtgtgcttgtttaagtacgtctcagtttcttatggcagaatacatcaaacaacgggcattgcatcacatgaaaaatact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42918022 |
taggttcatttatcaaactaagtgtgcttgtttaagtacgtctcagtttcttatggcagaatacatcaaacaacgggcattgcatcacatgacaaatact |
42917923 |
T |
|
| Q |
101 |
caaataaaactaagggagtaaatctgagaaaactagtttgataaaagaatatatttctttggagtaggaagcattacccaaggcaatgcaccgatatgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42917922 |
caaataaaactaagggagtaaatctgagaaaactagtttgataaaagaatatatttctttggagtaggaagcattacccaaggcaatgcaccgatatgat |
42917823 |
T |
|
| Q |
201 |
cttcatgaccgtgtgttataactactgcttcaattttgtggctccattttttaataaatgttgtatcaggtattatcttctggaccccaagctcatcatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42917822 |
cttcatgaccgtgtgttataactactgcttcaattttgtggctccattttttaataaatgttgtatcaggtattatcttctggaccccaagctcatcatc |
42917723 |
T |
|
| Q |
301 |
gctgaaatcagttaacaatgtagacnnnnnnnggccggttaacctagaaaactaatgaaaatcagagcaaaaaacaatcatgaagcagcaatttgatacc |
400 |
Q |
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| T |
42917722 |
gctgaaaccagttaacaatgtatacaaaaaaaggtcggttaacctagaaaactaatgaaaatcagagaaaaatacaatcatgaagcagcaatttgataca |
42917623 |
T |
|
| Q |
401 |
gcataatggacttgtaaaccctaccctggaaacatgacaccggcatcaacgaggatatatcgatcatgattcccaacaagcatacaattcatcc |
494 |
Q |
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| T |
42917622 |
gcataatggacttgtaaaccctaccctggaaacatgacaccggcatcaacgaggatatatcgatcatgattcccaacaagcatacaattcatcc |
42917529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 166 - 307
Target Start/End: Original strand, 33965175 - 33965316
Alignment:
| Q |
166 |
aggaagcattacccaaggcaatgcaccgatatgatcttcatgaccgtgtgttataactactgcttcaattttgtggctccattttttaataaatgttgta |
265 |
Q |
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||||||||||||||| ||||| ||||| ||||||||||||||||| ||||||||||| | |||||||||||||||||||||||| | ||||| |||||| |
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| T |
33965175 |
aggaagcattacccagggcaacgcaccaatatgatcttcatgaccatgtgttataacaagcgcttcaattttgtggctccattttcttataaacgttgta |
33965274 |
T |
|
| Q |
266 |
tcaggtattatcttctggaccccaagctcatcatcgctgaaa |
307 |
Q |
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| T |
33965275 |
tcaggtataatcttttgtactccgaggtcatcatagctgaaa |
33965316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 428 - 492
Target Start/End: Original strand, 33965973 - 33966037
Alignment:
| Q |
428 |
ggaaacatgacaccggcatcaacgaggatatatcgatcatgattcccaacaagcatacaattcat |
492 |
Q |
| |
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|||||||||| ||| ||||||| ||||||||| || |||||||||||||| |||||||| ||||| |
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| T |
33965973 |
ggaaacatgataccagcatcaatgaggatataacggtcatgattcccaacgagcatacagttcat |
33966037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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