View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_low_84 (Length: 211)
Name: NF8508_low_84
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_84 |
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Alignment Details
Target: chr6 (Bit Score: 116; Significance: 3e-59; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 79 - 198
Target Start/End: Original strand, 11001641 - 11001760
Alignment:
| Q |
79 |
actctaccatcttctcaaacatgaatgacactatagttctatatcctgctctaggtagtggacacttaatgtccatgattgaattaggaaaactaatatt |
178 |
Q |
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| T |
11001641 |
actctaccatcttctcaaacatgaatgacactatagttctatatcctgctctaggtagtggacacttaatgtccatgattgaattaggaaaactaatatt |
11001740 |
T |
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| Q |
179 |
aactcaccaccctttatttt |
198 |
Q |
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||||||||||||||| |||| |
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| T |
11001741 |
aactcaccaccctttgtttt |
11001760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 93 - 198
Target Start/End: Original strand, 10981422 - 10981527
Alignment:
| Q |
93 |
tcaaacatgaatgacactatagttctatatcctgctctaggtagtggacacttaatgtccatgattgaattaggaaaactaatattaactcaccaccctt |
192 |
Q |
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| T |
10981422 |
tcaaacatgaaggacactatagttttgtatcctgctcttggtagtggacacttgatgcctatggttgagttaggaaaactaatatcaactcaccaccctt |
10981521 |
T |
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| Q |
193 |
tatttt |
198 |
Q |
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||||| |
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| T |
10981522 |
catttt |
10981527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 98 - 198
Target Start/End: Original strand, 10967519 - 10967619
Alignment:
| Q |
98 |
catgaatgacactatagttctatatcctgctctaggtagtggacacttaatgtccatgattgaattaggaaaactaatattaactcaccaccctttattt |
197 |
Q |
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| T |
10967519 |
catgaaggacactattgttctctaccctgctcttggtagtggacacttgatgtccatgattgaattaggcaaactcatagtaactcatcacccttcattt |
10967618 |
T |
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| Q |
198 |
t |
198 |
Q |
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| T |
10967619 |
t |
10967619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 95 - 198
Target Start/End: Original strand, 11078804 - 11078907
Alignment:
| Q |
95 |
aaacatgaatgacactatagttctatatcctgctctaggtagtggacacttaatgtccatgattgaattaggaaaactaatattaactcaccacccttta |
194 |
Q |
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||||||||| |||||||||||||| || ||||| | || ||||||||||||||||||||| |||| ||||||||||| ||| ||||||||||||||| | |
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| T |
11078804 |
aaacatgaaggacactatagttctctaccctgcctttggaagtggacacttaatgtccatggttgagttaggaaaactcatactaactcaccacccttca |
11078903 |
T |
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| Q |
195 |
tttt |
198 |
Q |
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|||| |
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| T |
11078904 |
tttt |
11078907 |
T |
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