View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_low_85 (Length: 207)
Name: NF8508_low_85
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_85 |
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Alignment Details
Target: chr3 (Bit Score: 172; Significance: 1e-92; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 46997756 - 46997931
Alignment:
| Q |
15 |
aagaagagattttgtttgtatcagactctttgttagcttttgctttaagtttcgcaatagactctgctgaaaaatgaaatattctctctctcaaaatagg |
114 |
Q |
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| T |
46997756 |
aagaagagattttgtttgtatcagactctttgttagcttttgctttaagtttcgcaatagactctgctgaaaaatgaaatattctctctctcaaaatagg |
46997855 |
T |
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| Q |
115 |
tgtttcatatctatgaataaactcgtcatgatgtttgaaaggaaggttgatgattggaccataaccttctggaaac |
190 |
Q |
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| T |
46997856 |
tgtttcatatctatgaataaactcgtcatgatgtttgaaaggaaggctgatgattggaccataaccttctggaaac |
46997931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 17 - 184
Target Start/End: Original strand, 47001421 - 47001589
Alignment:
| Q |
17 |
gaagagattttgtttgtatcagactctttgttagcttttgc-tttaagtttcgcaatagactctgctgaaaaatgaaatattctctctctcaaaataggt |
115 |
Q |
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| T |
47001421 |
gaagagattttgtttgtatcaaactctttgttagcttttgcctttaagtttcgctatagactctgctgaaaaatggaatatcctctctctcaaagtaggt |
47001520 |
T |
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| Q |
116 |
gtttcatatctatgaataaactcgtcatgatgtttgaaaggaaggttgatgattggaccataaccttct |
184 |
Q |
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| T |
47001521 |
gcttgatatctgtgaataaactcgtcgtgatgtttgaaaggaaggttgatagttggaccataaccttct |
47001589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 7e-51
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 46995498 - 46995671
Alignment:
| Q |
17 |
gaagagattttgtttgtatcagactctttgttagcttttgctttaagtttcgcaatagactctgctgaaaaatgaaatattctctctctcaaaataggtg |
116 |
Q |
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| T |
46995498 |
gaagagattttcgttgtctcgcactctttgtttgcctttgctttgagttttgctataaactctgctgaaaaatggaagattctctctctcaaaataggtg |
46995597 |
T |
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| Q |
117 |
tttcatatctatgaataaactcgtcatgatgtttgaaaggaaggttgatgattggaccataaccttctggaaac |
190 |
Q |
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| T |
46995598 |
cttcatatctatgaataaactcgtcgtgatgtttgaaaggaaggttgataattggaccatagccttcaggaaac |
46995671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 46980684 - 46980857
Alignment:
| Q |
17 |
gaagagattttgtttgtatcagactctttgttagcttttgctttaagtttcgcaatagactctgctgaaaaatgaaatattctctctctcaaaataggtg |
116 |
Q |
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| T |
46980684 |
gaagaaattttgtttgtattagactctgcatttgcctttgctttaagttttgctatagattccactgaaaaatggaagattctctctcttaaaatgggtg |
46980783 |
T |
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| Q |
117 |
tttcatatctatgaataaactcgtcatgatgtttgaaaggaaggttgatgattggaccataaccttctggaaac |
190 |
Q |
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| T |
46980784 |
tttcatatctgtgaacaaactcatggtgatgtttgaatggaaggttgataattggaccataaccttgtggaaac |
46980857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 46974695 - 46974868
Alignment:
| Q |
17 |
gaagagattttgtttgtatcagactctttgttagcttttgctttaagtttcgcaatagactctgctgaaaaatgaaatattctctctctcaaaataggtg |
116 |
Q |
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| T |
46974695 |
gaagaaatttttcttgtattagactcttcatttgcctttgctttcagtttcattatagactcagctgaaaaatggaagattctctctcttaaaatggatg |
46974794 |
T |
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| Q |
117 |
tttcatatctatgaataaactcgtcatgatgtttgaaaggaaggttgatgattggaccataaccttctggaaac |
190 |
Q |
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| T |
46974795 |
tttcatatctgtgaacaaactcctcgtgatgtttgaatggaaggttgataatcggaccataaccttgtggaaac |
46974868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 46951256 - 46951429
Alignment:
| Q |
17 |
gaagagattttgtttgtatcagactctttgttagcttttgctttaagtttcgcaatagactctgctgaaaaatgaaatattctctctctcaaaataggtg |
116 |
Q |
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| T |
46951256 |
gaagagattttgtttgtattagactccatattggccttagctttcaactttgcaatagactctgctgtaaaatggaagaatctctctctcagcttgggtg |
46951355 |
T |
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| Q |
117 |
tttcatatctatgaataaactcgtcatgatgtttgaaaggaaggttgatgattggaccataaccttctggaaac |
190 |
Q |
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| T |
46951356 |
gttcatacctagttataatctcgtcatgatgtttgaatggaagattgatcagtggaccataaccttctggaaac |
46951429 |
T |
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