View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8508_low_9 (Length: 511)
Name: NF8508_low_9
Description: NF8508
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8508_low_9 |
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| [»] scaffold0321 (3 HSPs) |
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Alignment Details
Target: scaffold0321 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 179 - 401
Target Start/End: Original strand, 15705 - 15927
Alignment:
| Q |
179 |
tgatttgtataactttgtgagtgtttgagtgtttaatctgccaatccttgtttgaatcctcttttgtcaatcactggatggatgatagaggtgaatcctc |
278 |
Q |
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| T |
15705 |
tgatttgtataactttgtgagtgtttgagtgtttaatctgccaatccttgtttgaatcctcttttgtcaatcactggatggatgatagaggtgaatcctc |
15804 |
T |
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| Q |
279 |
ttttgttggtaaacgatatagcaatgcttaacattgtttctattattctatatatagcagttctctttattattttttcgtcaaaaacaaataagaagca |
378 |
Q |
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| T |
15805 |
ttttgtcggtaaacgatatagcaatgcttaacattgtttctattattctatatatagcagttctctttattattttttcgtcaaaaacaaataagaagca |
15904 |
T |
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| Q |
379 |
aggtagataacgtttgtatataa |
401 |
Q |
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| T |
15905 |
aggtagataaagtttgtatataa |
15927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0321; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 18 - 182
Target Start/End: Original strand, 15506 - 15669
Alignment:
| Q |
18 |
catgataacaactatcttaaagatttcattttcctcttgttttcctctatcattagctaatttgaaatctgaaataataacgagaatcgtcaaatgcata |
117 |
Q |
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| T |
15506 |
catgataacaactatcttaaagatttcattttcctctggttttcctctatcattagctaatttgaaatctgaaataataacgagaatcgtcaaatgcata |
15605 |
T |
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| Q |
118 |
gtggtcttctataataggatcggggaattctgtgtcttcattttcgtggaaatatgtttcatgat |
182 |
Q |
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| T |
15606 |
gtggtcttctataataggatcgggg-attctgtgtcttcattttcgtggaaatatgtttcatgat |
15669 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0321; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 421 - 511
Target Start/End: Original strand, 16003 - 16093
Alignment:
| Q |
421 |
ttcacttttttgaaggtacttttactgtggctgtgtttggctacactggtggtaggagattatgctccatcaccacaaaatccattcgtta |
511 |
Q |
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| T |
16003 |
ttcactttttttaaggtacttttactgtggctgtgtttggctacactggtggttggagattatgctccatcaccacaaaatccattcgtta |
16093 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 90 - 182
Target Start/End: Original strand, 8666548 - 8666638
Alignment:
| Q |
90 |
aataataacgagaatcgtcaaatgcatagtggtcttctataataggatcggggaattctgtgtcttcattttcgtggaaatatgtttcatgat |
182 |
Q |
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| T |
8666548 |
aataatgacgggaatcatcaaatgcatagtagtcttctataatagaat--gggaattctgtgtcttcatttttgtggaagtatattttatgat |
8666638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 8666439 - 8666501
Alignment:
| Q |
27 |
aactatcttaaagatttcattttcctcttgttttcctctatcattagctaatttgaaatctga |
89 |
Q |
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| T |
8666439 |
aactgtcttaagcatttcattctcctctttttttcctctatcattagctaatttgaaatctga |
8666501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 234
Target Start/End: Original strand, 8666673 - 8666727
Alignment:
| Q |
179 |
tgatttgtataactttgtgagtgtttgagtgtttaatctgccaatccttgtttgaa |
234 |
Q |
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| T |
8666673 |
tgatttgtataactt-gcaagtgtttgagtgtttaatctgccagttcttgtttgaa |
8666727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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