View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8509_high_10 (Length: 448)
Name: NF8509_high_10
Description: NF8509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8509_high_10 |
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| [»] scaffold0941 (1 HSPs) |
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| [»] scaffold0098 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Original strand, 30411033 - 30411460
Alignment:
| Q |
1 |
tgatgaacaagcagtcctgcaacaagatatctagttcttaaaagagtcatggtccaaccttgttgagatggagccaatgatggtgactttgaacaagatc |
100 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
30411033 |
tgatgatcaagcagtcctgcaacaagatatctagttcttaaaagagtcatggtccaaccttgttgagatgaagccaatgatggtgactttgaacaagatc |
30411132 |
T |
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| Q |
101 |
tcaatgctgtcaagtaacaggtcaggaggtaaatacagctagaaacttgattggtaagttacctgcagaaacatctttttccaaagaagcagatgctctt |
200 |
Q |
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| T |
30411133 |
tcaatgctgtcaat--acaggtcaggaggcaaatacatctagaaacttgattggtaagttacctgcagaaacatctttgtccaaagaagcagatgctctt |
30411230 |
T |
|
| Q |
201 |
aaccttgatgttgatgaacaagggtttcagattgttactagcaaatcaacaaaagaaagcttcaaagaaatctagtactcagaggatctcaaagtcaaaa |
300 |
Q |
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| T |
30411231 |
aaccttgatgttgatgaacaagggtttcagattgttactagcaaatcaacaaaagaaagcttcaaagaaatctagtactcagaggatctcaaagtcaaaa |
30411330 |
T |
|
| Q |
301 |
ccttatcttgccagatcaaaggttggtcctcccaaaccttttagatgagtgctattggaacttcagaggtttatctaatactcccacaaaattagcttta |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30411331 |
ccttatcttgccagatcaaaggttggtcctcccaaaccttttagatgagtgctattggaacttcagaggtttagctaatactcccacaaaattagcttta |
30411430 |
T |
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| Q |
401 |
aagaaacttcttattaaatataagcatgat |
430 |
Q |
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| T |
30411431 |
aagaaacttcttattaaatataagcatgat |
30411460 |
T |
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Target: scaffold0941 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0941
Description:
Target: scaffold0941; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 313 - 397
Target Start/End: Original strand, 1518 - 1606
Alignment:
| Q |
313 |
agatcaaaggttggtcctcccaaaccttttagatga-gtgc---tattggaacttcagaggtttatctaatactcccacaaaattagct |
397 |
Q |
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||||||||||||||| ||||||| |||||||||||| |||| ||||||||||| ||||||||| ||||| |||| |||||||||||| |
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| T |
1518 |
agatcaaaggttggtgctcccaagccttttagatgaagtgcctttattggaacttaagaggtttagctaattctcctacaaaattagct |
1606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0098 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0098
Description:
Target: scaffold0098; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 313 - 397
Target Start/End: Complemental strand, 36600 - 36512
Alignment:
| Q |
313 |
agatcaaaggttggtcctcccaaaccttttagatga-gtgc---tattggaacttcagaggtttatctaatactcccacaaaattagct |
397 |
Q |
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|||||||||||| || ||||||| | ||||| |||| |||| ||||||||||| ||||||||| ||||| |||| |||||||||||| |
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| T |
36600 |
agatcaaaggttcgtgctcccaagcattttatatgaagtgcatttattggaacttaagaggtttagctaattctcctacaaaattagct |
36512 |
T |
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