View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8509_high_12 (Length: 442)
Name: NF8509_high_12
Description: NF8509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8509_high_12 |
 |  |
|
| [»] scaffold0009 (1 HSPs) |
 |  |  |
|
| [»] scaffold0256 (1 HSPs) |
 |  |  |
|
| [»] scaffold0014 (1 HSPs) |
 |  |  |
|
Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 423
Target Start/End: Original strand, 21291964 - 21292364
Alignment:
| Q |
18 |
gctatggttggtgctcgcgttttgggcaaaattaaaattgtatgggttggtgtgatttgaatcagttctgcactttcgggttccgagcatgtgggttata |
117 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
21291964 |
gctatggttggtgctcgtgttttgggcaaaa-----attgtacgggttggtgtgatttgaatcagttatgcactttcgggttccgagcatgtgggttatg |
21292058 |
T |
 |
| Q |
118 |
tcggatggccgctccattggacggaggatccaaattgataggccaaaaatagccgtacaaacttgatgtcttgtgtcttagtgagtggttggtgggtgga |
217 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
21292059 |
tcggatggccgctccatttgacggaggatccaaattgatgggccaaaaatagtcgtacaaacttgatgtcttctgtctcagtgagtggttggtgggtgga |
21292158 |
T |
 |
| Q |
218 |
ttcgctaccgtgttcgtggtcggattcatttccattggtaaaaggttggagttcagacttatgcctaggttgtgcttgtataatcgcttgatgtgggcta |
317 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||| |
|
|
| T |
21292159 |
ctcgctgccgtgttcgtggtcggattcatttccattggtaaaaggttggagttcagacttatgcctagtttgtgcttgtatgatcgcttgatgtgggcta |
21292258 |
T |
 |
| Q |
318 |
gaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccacttgc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| | |||||||||||||||| |
|
|
| T |
21292259 |
gaaatggctgattaatttgttgttgatcatcgcagtaaacggttggtgcgtgttaattcgttaattaccgtgttggcggtcaagtccactccccacttgc |
21292358 |
T |
 |
| Q |
418 |
aagcat |
423 |
Q |
| |
|
|||||| |
|
|
| T |
21292359 |
aagcat |
21292364 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 21949745 - 21949830
Alignment:
| Q |
329 |
ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||||| |||||||||| ||| ||||| ||| |||||||| |||| |||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
21949745 |
ttaatttgatgttgatcatagcagtaaacagttcgtgcgtgtggattttttaattaccgtgttggtggttgaatctactccccact |
21949830 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 329 - 414
Target Start/End: Complemental strand, 46809122 - 46809037
Alignment:
| Q |
329 |
ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||||| |||||||||| ||| ||||| ||| |||||||| ||| ||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
46809122 |
ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggtggttgaatctactccccact |
46809037 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 414
Target Start/End: Complemental strand, 6617130 - 6617028
Alignment:
| Q |
311 |
tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc |
410 |
Q |
| |
|
||||| ||||||| ||| |||||||| |||||||||| ||| ||||| ||| ||| |||| |||| ||||||||||||||||| ||| ||||| ||||| |
|
|
| T |
6617130 |
tgggccagaaatgactg-ttaatttgatgttgatcatagcagtaaactgttagtgtgtgtggatttgttaattaccgtgttggcggttgaatctactcca |
6617032 |
T |
 |
| Q |
411 |
cact |
414 |
Q |
| |
|
|||| |
|
|
| T |
6617031 |
cact |
6617028 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 34638490 - 34638575
Alignment:
| Q |
329 |
ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||||| |||||||||| ||| ||||| ||| |||||||| || ||||||||||||||||| ||| ||||| ||| |||||| |
|
|
| T |
34638490 |
ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatctgttaattaccgtgttggcggttgaatctacttcccact |
34638575 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 414
Target Start/End: Complemental strand, 42053709 - 42053624
Alignment:
| Q |
329 |
ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||||| |||||||||| ||| ||||| ||| |||||||| || ||||||||||||||||| ||| ||||| ||| |||||| |
|
|
| T |
42053709 |
ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatctgttaattaccgtgttggcggttgaatctacttcccact |
42053624 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 414
Target Start/End: Complemental strand, 20647584 - 20647502
Alignment:
| Q |
331 |
aatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||||||||||| ||| ||| ||| |||||||| ||| |||| ||||| ||||||||||| |||||||||| ||| ||||| |
|
|
| T |
20647584 |
aatttgttgttgattatcacaacaaatggttggtga-tgtggatttgttaaataccgtgttggcggtcgaatccgctctccact |
20647502 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 4e-82; HSPs: 15)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 61 - 428
Target Start/End: Complemental strand, 29689308 - 29688941
Alignment:
| Q |
61 |
gggttggtgtgatttgaatcagttctgcac--tttcgggttccgagcatgtgggttatatcggatggccgctccattggacggaggatccaaattgatag |
158 |
Q |
| |
|
|||||||||||||| || ||| ||||||| |||| | ||||||| |||||||||| ||||||||| |||| ||| |||||||||| ||||||||||| |
|
|
| T |
29689308 |
gggttggtgtgattcgactcaaatctgcacactttcagcttccgagtgtgtgggttatgtcggatggcggctctatttgacggaggattcaaattgatag |
29689209 |
T |
 |
| Q |
159 |
gccaaaaatagccgtacaaacttgatgtcttgtgtcttagtgagtggttggtgggtggattcgctaccgtgttcgtggtcggattcatttccattggtaa |
258 |
Q |
| |
|
| |||||| ||||||||||||| ||||| |||| | |||||||||||||| ||||||| |||||||||||| | | |||| |||||| |||||||| | |
|
|
| T |
29689208 |
actaaaaatgaccgtacaaacttgttgtctagtgtgtcagtgagtggttggtaggtggatccgctaccgtgttggcgatcgg-ttcattgccattggtga |
29689110 |
T |
 |
| Q |
259 |
aaggttggagttcagacttatgcctaggttgtgcttgtataatcgcttgatgtgggctagaaatggctgattaatttgttgttgatcatcgcaataaacg |
358 |
Q |
| |
|
| |||||||| |||||||| ||||||||||||||| |||| | | | || |||||||| |||||| ||||||||||||||||| ||||||||| |||||| |
|
|
| T |
29689109 |
a-ggttggagctcagacttgtgcctaggttgtgctagtatgaccacatgttgtgggctggaaatgactgattaatttgttgttaatcatcgcagtaaacg |
29689011 |
T |
 |
| Q |
359 |
gttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccacttgcaagcatttgtc |
428 |
Q |
| |
|
|||||||| || |||||| ||||||||||||||| ||||||| ||||||||||||| |||||||||||| |
|
|
| T |
29689010 |
attggtgcgcgtggattcgctaattaccgtgttggcggtcgaacccactccccactttcaagcatttgtc |
29688941 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 102 - 423
Target Start/End: Complemental strand, 37011435 - 37011115
Alignment:
| Q |
102 |
gagcatgtgggttatatcggatggccgctccattggacggaggatccaaattgataggccaaaaatagccgtacaaacttgatgtcttgtgtcttagtga |
201 |
Q |
| |
|
|||| |||||||| | | |||||| |||||||| || ||||||| || |||||||||| | |||| | |||||||||||||||| | |||||||||||| |
|
|
| T |
37011435 |
gagcgtgtgggttttgttggatggtagctccatttgatggaggattcagattgataggctagaaatggtcgtacaaacttgatgtatggtgtcttagtga |
37011336 |
T |
 |
| Q |
202 |
gtggttggtgggtggattcgctaccgtgttcgtggtcggattcatttccattggtaaaaggttggagttcagacttatgcctaggttgtgcttgtataat |
301 |
Q |
| |
|
|||||||||| |||||||||||| |||||| | ||||||||||||| |||||||| |||||||||| || |||||| |||||| ||||||||||| | || |
|
|
| T |
37011335 |
gtggttggtgagtggattcgctatcgtgttggcggtcggattcattgccattggt-aaaggttggattttagacttgtgcctatgttgtgcttgtgtgat |
37011237 |
T |
 |
| Q |
302 |
cgcttgatgtgggctagaaatggctgattaat-ttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcga |
400 |
Q |
| |
|
||||| ||||||||| ||||||||||||||| ||||| |||||||||| | ||||| |||||||| || |||| | |||||| ||||| |||| | |
|
|
| T |
37011236 |
cgctttttgtgggctaaaaatggctgattaatattgtt-ttgatcatcgtagtaaacagttggtgcaggtggatttgctaattattgtgttaacggtcaa |
37011138 |
T |
 |
| Q |
401 |
atccactccccacttgcaagcat |
423 |
Q |
| |
|
|| |||||||||||| ||||||| |
|
|
| T |
37011137 |
attcactccccactttcaagcat |
37011115 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 61 - 277
Target Start/End: Complemental strand, 29689539 - 29689323
Alignment:
| Q |
61 |
gggttggtgtgatttgaatcagttctgcac--tttcgggttccgagcatgtgggttatatcggatggccgctccattggacggaggatccaaattgatag |
158 |
Q |
| |
|
|||||||||||||| || ||| ||||||| |||| | ||||||| |||||||||| ||||||||| |||| ||| |||||||||| ||||||||||| |
|
|
| T |
29689539 |
gggttggtgtgattcgactcaaatctgcacattttcagcttccgagtgtgtgggttatgtcggatggcggctctatttgacggaggattcaaattgatag |
29689440 |
T |
 |
| Q |
159 |
gccaaaaatagccgtacaaacttgatgtcttgtgtcttagtgagtggttggtgggtggattcgctaccgtgttcgtggtcggattcatttccattggtaa |
258 |
Q |
| |
|
| |||||| ||||||||||||| ||||| |||| | |||||||||||||| |||||||||||||||||||| | |||||| |||||| |||||||| |
|
|
| T |
29689439 |
actaaaaatgaccgtacaaacttgttgtctagtgtgtcagtgagtggttggtaggtggattcgctaccgtgttggcggtcgg-ttcattgccattggt-g |
29689342 |
T |
 |
| Q |
259 |
aaggttggagttcagactt |
277 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
29689341 |
aaggttggagctcagactt |
29689323 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 311 - 407
Target Start/End: Complemental strand, 23493466 - 23493371
Alignment:
| Q |
311 |
tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccact |
407 |
Q |
| |
|
||||||||||||||||| |||||||||||| | |||| ||| ||||| |||||| || || |||||| |||||||||||||| ||| ||||||||| |
|
|
| T |
23493466 |
tgggctagaaatggctg-ttaatttgttgtagttcatggcagtaaacagttggtacgagtggattcgcgaattaccgtgttggcggtagaatccact |
23493371 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 414
Target Start/End: Complemental strand, 34806387 - 34806285
Alignment:
| Q |
311 |
tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc |
410 |
Q |
| |
|
||||| ||||||| ||| |||||||| |||||||||| ||| ||||| ||| |||||||| ||| ||||||||||||||||| ||| ||||| ||||| |
|
|
| T |
34806387 |
tgggccagaaatgactg-ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctgctccc |
34806289 |
T |
 |
| Q |
411 |
cact |
414 |
Q |
| |
|
|||| |
|
|
| T |
34806288 |
cact |
34806285 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 414
Target Start/End: Original strand, 36316192 - 36316294
Alignment:
| Q |
311 |
tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc |
410 |
Q |
| |
|
||||| ||||||| ||| |||||||| |||||||||| ||| ||||| ||| |||||||| ||| |||||||||||||||| ||| ||||| |||||| |
|
|
| T |
36316192 |
tgggccagaaatgactg-ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaattttttaattaccgtgttggcggttgaatctactccc |
36316290 |
T |
 |
| Q |
411 |
cact |
414 |
Q |
| |
|
|||| |
|
|
| T |
36316291 |
cact |
36316294 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 414
Target Start/End: Original strand, 36330401 - 36330503
Alignment:
| Q |
311 |
tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc |
410 |
Q |
| |
|
||||| ||||||| ||| |||||||| |||||||||| ||| ||||| ||| |||||||| ||| |||||||||||||||| ||| ||||| |||||| |
|
|
| T |
36330401 |
tgggccagaaatgactg-ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaattttttaattaccgtgttggcggttgaatctactccc |
36330499 |
T |
 |
| Q |
411 |
cact |
414 |
Q |
| |
|
|||| |
|
|
| T |
36330500 |
cact |
36330503 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 328 - 414
Target Start/End: Original strand, 53095190 - 53095276
Alignment:
| Q |
328 |
attaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
||||| ||||||| ||| |||||| |||| ||||||||| ||| ||||||| | |||||||||||||||| | |||||||| ||||| |
|
|
| T |
53095190 |
attaacttgttgtggattatcgcagtaaatggttggtgcatgtagattcgtcatttaccgtgttggtggttggatccactctccact |
53095276 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 412
Target Start/End: Original strand, 27020242 - 27020342
Alignment:
| Q |
311 |
tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc |
410 |
Q |
| |
|
||||| ||||||| ||| |||||||| |||||||||| ||| ||||| ||| |||| ||| ||| ||||||||||||||||| ||| ||||| |||||| |
|
|
| T |
27020242 |
tgggccagaaatgactg-ttaatttgatgttgatcatagcagtaaacagttagtgcatgtgaatttgttaattaccgtgttggcggttgaatctactccc |
27020340 |
T |
 |
| Q |
411 |
ca |
412 |
Q |
| |
|
|| |
|
|
| T |
27020341 |
ca |
27020342 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 414
Target Start/End: Complemental strand, 39296002 - 39295917
Alignment:
| Q |
329 |
ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||||| |||||||||| ||| ||||| ||| ||| |||| |||| ||||||||||||||||| || ||||| |||||||||| |
|
|
| T |
39296002 |
ttaatttgatgttgatcatagcagtaaacagttagtgtgtgtggatttgttaattaccgtgttggctgttgaatctactccccact |
39295917 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 414
Target Start/End: Complemental strand, 5948270 - 5948185
Alignment:
| Q |
329 |
ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||||| |||||||||| ||| ||||| ||| |||||||| || ||||||||||||||||| ||| ||||| ||| |||||| |
|
|
| T |
5948270 |
ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatctgttaattaccgtgttggcggttgaatctacttcccact |
5948185 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 333
Target Start/End: Complemental strand, 34851678 - 34851624
Alignment:
| Q |
279 |
tgcctaggttgtgcttgtataatcgcttgatgtgggctagaaatggctgattaat |
333 |
Q |
| |
|
||||| ||||||| |||||| ||||||||||||||| |||||||||| |||||| |
|
|
| T |
34851678 |
tgcctcggttgtgtttgtatgttcgcttgatgtgggccagaaatggctaattaat |
34851624 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 393
Target Start/End: Original strand, 32107426 - 32107490
Alignment:
| Q |
329 |
ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttgg |
393 |
Q |
| |
|
|||||||||||| | ||||||||||| |||||||||| || |||| |||| |||||||||||| |
|
|
| T |
32107426 |
ttaatttgttgtggcctatcgcaataaatggttggtgcgagtggatttgttatttaccgtgttgg |
32107490 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 427
Target Start/End: Original strand, 33287452 - 33287540
Alignment:
| Q |
339 |
gttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccacttgcaagcatttgt |
427 |
Q |
| |
|
|||||||| |||| ||||| |||||| || |||| |||| |||||||||||| |||| |||||| |||||| || ||||||||||| |
|
|
| T |
33287452 |
gttgatcaccgcagtaaacaagtggtgcacgtggatttgttatttaccgtgttggcggtcaaatccagtccccaatttcaagcatttgt |
33287540 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 427
Target Start/End: Complemental strand, 34851621 - 34851554
Alignment:
| Q |
359 |
gttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccacttgcaagcatttgt |
427 |
Q |
| |
|
||||||||| || ||||||||||||||||||||| ||||||| ||| ||||| || ||||||||||| |
|
|
| T |
34851621 |
gttggtgcgcgtgaattcgttaattaccgtgttggcagtcgaattcac-ccccattttcaagcatttgt |
34851554 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 120; Significance: 3e-61; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 61 - 429
Target Start/End: Original strand, 11121112 - 11121468
Alignment:
| Q |
61 |
gggttggtgtgatttgaatcagttctgcactttcgggttccgagcatgtgggttatatcggatggccgctccattggacggaggatccaaattgataggc |
160 |
Q |
| |
|
|||||||||| ||| |||||| |||||||||||| |||| ||| |||||||| | || |||||| |||||||| ||| || || || |||||||||| |
|
|
| T |
11121112 |
gggttggtgttattcaaatcagatctgcactttcgagttctaagcgtgtgggttctgtcagatggcagctccatttgacaaagtattcagattgataggc |
11121211 |
T |
 |
| Q |
161 |
caaaaatagccgtacaaacttgatgtcttgtgtcttagtgagtggttggtgggtggattcgctaccgtgttcgtggtcggattcatttccattggtaaaa |
260 |
Q |
| |
|
| ||| | | |||||||||| |||||||||||| | ||||||||| | ||||| ||||||||||| ||| | |||| ||||||| |||||||||||| |
|
|
| T |
11121212 |
tagaaacggtcatacaaacttgttgtcttgtgtctcaatgagtggttcgcgggtgtattcgctaccgcgttggcggtcaaattcattgccattggtaaaa |
11121311 |
T |
 |
| Q |
261 |
ggttggagttcagacttatgcctaggttgtgcttgtataatcgcttgatgtgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggt |
360 |
Q |
| |
|
|||||||||||| | || |||||| |||||||||| || || ||||| ||||||| || |||||| | |||||||||||| |||||||| |
|
|
| T |
11121312 |
ggttggagttcataattgtgcctaagttgtgcttgcatgatggcttgttgtgggccag------------aatttgctattgatcatcgcagtaaacggt |
11121399 |
T |
 |
| Q |
361 |
tggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccacttgcaagcatttgtct |
429 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
11121400 |
tggtgcgtgtggattcgttaattaccgtgttggcggtcgaatccactccccactttcaagcatctgtct |
11121468 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 414
Target Start/End: Original strand, 1122221 - 1122282
Alignment:
| Q |
353 |
taaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
||||| |||| ||||||| |||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1122221 |
taaaccgttgttgcgtgtggattcgctaattaccgtgttggcggtcgaatccactccccact |
1122282 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 22460563 - 22460488
Alignment:
| Q |
338 |
tgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccac |
413 |
Q |
| |
|
||||||| |||||| |||| |||||||| ||||||||||| || |||||||||||| ||| ||||| ||||||||| |
|
|
| T |
22460563 |
tgttgatgatcgcattaaatggttggtgtgtgttgattcgctatttaccgtgttggcggttgaatctactccccac |
22460488 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 18898895 - 18898980
Alignment:
| Q |
329 |
ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||||| |||||||||| ||| ||||| ||| |||||||| ||| ||||||||||||||||| ||| ||||| ||| |||||| |
|
|
| T |
18898895 |
ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctacttcccact |
18898980 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 414
Target Start/End: Complemental strand, 15559752 - 15559665
Alignment:
| Q |
329 |
ttaatttgttgttgatcatc--gcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||| |||||||||||||| ||| |||| ||| |||||||| |||||| ||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
15559752 |
ttaagttgttgttgatcatatagcagtaaatagtttgtgcgtgtggattcgctaattacagtgttggtagtcgaatccaccccccact |
15559665 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 330
Target Start/End: Original strand, 24316543 - 24316594
Alignment:
| Q |
279 |
tgcctaggttgtgcttgtataatcgcttgatgtgggctagaaatggctgatt |
330 |
Q |
| |
|
||||| |||||||||||||| ||| |||| ||| |||||||||||||||||| |
|
|
| T |
24316543 |
tgcctcggttgtgcttgtatgatctcttgttgtaggctagaaatggctgatt |
24316594 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 427
Target Start/End: Original strand, 720280 - 720347
Alignment:
| Q |
359 |
gttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccacttgcaagcatttgt |
427 |
Q |
| |
|
||||||||| || ||||||||||||||||||||| |||| ||||||| ||| | || ||||||||||| |
|
|
| T |
720280 |
gttggtgcgcgtgaattcgttaattaccgtgttggcggtcaaatccac-ccctattttcaagcatttgt |
720347 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 61 - 333
Target Start/End: Original strand, 3730158 - 3730429
Alignment:
| Q |
61 |
gggttggtgtgatttgaatcagttctgcactttcgggttccgagcatgtgggttatatcggatggccgctccattggacggaggatccaaattgataggc |
160 |
Q |
| |
|
|||||||||||| | || |||| ||| |||||||| ||||||||| |||| ||||| || ||| | | || ||| || ||||||| ||||||| || |
|
|
| T |
3730158 |
gggttggtgtgactcgactcagatcttcactttcgtgttccgagcgtgtgagttatgtcaaatgacagttctatttgagggaggattttgattgatatgc |
3730257 |
T |
 |
| Q |
161 |
caaaaatagccgtacaaacttgatgtcttgtgtcttagtgagtggttggtgggtggattcgctaccgtgttcgtggtcggattcatttccattggtaaaa |
260 |
Q |
| |
|
| |||| | |||||||||||| |||||||||||| ||| |||||||||||||| |||||| ||||||||| | ||||||||||||| |||||||| ||| |
|
|
| T |
3730258 |
tagaaattgtcgtacaaacttgttgtcttgtgtctcagttagtggttggtgggtagattcgataccgtgtttgcggtcggattcattgccattggt-aaa |
3730356 |
T |
 |
| Q |
261 |
ggttggagttcagacttatgcctaggttgtgcttgtataatcgcttgatgtgggctagaaatggctgattaat |
333 |
Q |
| |
|
||||| ||||| ||||| |||||||| |||||||||| |||||||| ||| ||| ||||||||||||||||| |
|
|
| T |
3730357 |
ggttgtagttcggacttgagcctaggtagtgcttgtatgatcgcttgttgttggccagaaatggctgattaat |
3730429 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 273 - 428
Target Start/End: Original strand, 18464653 - 18464808
Alignment:
| Q |
273 |
gacttatgcctaggttgtgcttgtataatcgcttgatgtgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttg |
372 |
Q |
| |
|
||||| |||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||| | ||||||| || | |
|
|
| T |
18464653 |
gacttgtgcctaggttgtgcctgtatgttcgcttgatgtgggccagaaatggctgattaatttgccgttgatcatcgcagtaaacaggtggtgcgcgtgg |
18464752 |
T |
 |
| Q |
373 |
attcgttaattaccgtgttggtggtcgaatccactccccacttgcaagcatttgtc |
428 |
Q |
| |
|
|||||||| ||||||||| || ||||||||||||||||||||| ||||||| |||| |
|
|
| T |
18464753 |
attcgttatttaccgtgtcggcggtcgaatccactccccactttcaagcatctgtc |
18464808 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 39617897 - 39617982
Alignment:
| Q |
329 |
ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||||| |||||||||| ||| ||||| ||| |||||||| ||| ||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
39617897 |
ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggtggttgaatctactccccact |
39617982 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 429
Target Start/End: Complemental strand, 31441884 - 31441784
Alignment:
| Q |
329 |
ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccacttgcaagcatttgtc |
428 |
Q |
| |
|
|||||||| ||||||| |||||| |||||| | ||||||||| |||| |||||| || ||||||| ||| |||||||||||||||| ||||| || |||| |
|
|
| T |
31441884 |
ttaatttgctgttgatgatcgcagtaaacgataggtgcgtgtggatttgttaatgactgtgttggcggttgaatccactccccactagcaagaatctgtc |
31441785 |
T |
 |
| Q |
429 |
t |
429 |
Q |
| |
|
| |
|
|
| T |
31441784 |
t |
31441784 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 12498711 - 12498796
Alignment:
| Q |
329 |
ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||||| |||||||||| ||| ||||| ||| |||||||| ||| ||||||||||||||||| ||| ||||| ||||| |||| |
|
|
| T |
12498711 |
ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctactcctcact |
12498796 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 18381355 - 18381440
Alignment:
| Q |
329 |
ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||||| |||||||||| ||| ||||| ||| |||||||| ||| ||||||||||||||||| ||| ||||| ||| |||||| |
|
|
| T |
18381355 |
ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctacttcccact |
18381440 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 413
Target Start/End: Original strand, 22935467 - 22935548
Alignment:
| Q |
331 |
aatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccac |
413 |
Q |
| |
|
|||||||||| | | ||| ||| ||| |||||||| ||| |||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
22935467 |
aatttgttgtggtttatcacaacaaatggttggtga-tgtggattcgttaactaccgtgttggcggtcgaatccactccccac |
22935548 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 403
Target Start/End: Complemental strand, 6420991 - 6420917
Alignment:
| Q |
329 |
ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatc |
403 |
Q |
| |
|
|||||||| |||||||||| ||| ||||| ||| |||||||| || ||||||||||||||||| ||| ||||| |
|
|
| T |
6420991 |
ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatctgttaattaccgtgttggcggttgaatc |
6420917 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 130 - 270
Target Start/End: Complemental strand, 12111773 - 12111633
Alignment:
| Q |
130 |
tccattggacggaggatccaaattgataggccaaaaatagccgtacaaacttgatgtcttgtgtcttagtgagtggttggtgggtggattcgctaccgtg |
229 |
Q |
| |
|
|||||| ||||||||| | |||||||||| | |||| ||||| ||||||||||| |||||||| || ||||| ||||| |||||||||||||| ||| |
|
|
| T |
12111773 |
tccatttgacggaggagtaagattgataggctagaaatggccgtttaaacttgatgttttgtgtctcagcgagtgattggttggtggattcgctacggtg |
12111674 |
T |
 |
| Q |
230 |
ttcgtggtcggattcatttccattggtaaaaggttggagtt |
270 |
Q |
| |
|
|| | ||| |||| ||| ||||| |||||||||||||||| |
|
|
| T |
12111673 |
ttggcagtcagatttattaccatttgtaaaaggttggagtt |
12111633 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 414
Target Start/End: Complemental strand, 19622668 - 19622575
Alignment:
| Q |
320 |
aatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||||| |||||||| | | |||||||||| || |||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
19622668 |
aatggctg-ttaatttgctatagatcatcgcagcaactggttggtgtgtgtggattcgttaattaccgtgttggtggtcaaatccactccccact |
19622575 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 4647942 - 4648027
Alignment:
| Q |
329 |
ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||||| |||||||||| ||| ||||| ||| |||| ||| |||| ||||||||||||||||| ||| ||||| |||||||||| |
|
|
| T |
4647942 |
ttaatttgatgttgatcatagcagtaaacagttagtgcatgtggatttgttaattaccgtgttggcggttgaatctactccccact |
4648027 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 414
Target Start/End: Original strand, 7647550 - 7647645
Alignment:
| Q |
317 |
agaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||||||| || |||||||||| ||| ||| ||| ||| |||||||| ||| |||||||||| ||||||||||| |||||||| ||||||||||| |
|
|
| T |
7647550 |
agaaatggct-atgaatttgttgtggattatcacaacaaatggttggtga-tgtggattcgttaactaccgtgttggcggtcgaatgcactccccact |
7647645 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 414
Target Start/End: Complemental strand, 17419151 - 17419096
Alignment:
| Q |
359 |
gttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||| |||||||| ||||| ||||| |
|
|
| T |
17419151 |
gttggtgcgtgtggattcgctaattaccgtgttggcggtcgaattcactcgccact |
17419096 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 414
Target Start/End: Complemental strand, 30960906 - 30960864
Alignment:
| Q |
372 |
gattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
30960906 |
gattcgttaattaccgtgttggcggtcgaatccgctccccact |
30960864 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 414
Target Start/End: Complemental strand, 40267896 - 40267811
Alignment:
| Q |
329 |
ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||||| |||||||||| ||| ||||| || |||||||| ||| ||||||||||||||||| ||| |||| ||||| |||| |
|
|
| T |
40267896 |
ttaatttgatgttgatcatagcagtaaacaattagtgcgtgtgaatttgttaattaccgtgttggcggtttaatctactcctcact |
40267811 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 311 - 414
Target Start/End: Original strand, 16044424 - 16044526
Alignment:
| Q |
311 |
tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc |
410 |
Q |
| |
|
||||||| ||||| ||| ||||||||||||||||||||| | |||| |||||||||| || |||||| |||||||| |||||| |||||||||| |||| |
|
|
| T |
16044424 |
tgggctataaatgactg-ttaatttgttgttgatcatcgtagtaaatggttggtgcgggtggattcgctaattaccatgttggcggtcgaatcctttccc |
16044522 |
T |
 |
| Q |
411 |
cact |
414 |
Q |
| |
|
|||| |
|
|
| T |
16044523 |
cact |
16044526 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 5808337 - 5808422
Alignment:
| Q |
329 |
ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||||| |||||||||| ||| ||||| ||| |||||||| ||| ||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
5808337 |
ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggtggttgaatctactccccact |
5808422 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 1594551 - 1594636
Alignment:
| Q |
329 |
ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||||| |||||||||| ||| ||||| ||| |||||||| |||| ||||||||||||||||| ||| ||||| ||||| |||| |
|
|
| T |
1594551 |
ttaatttgatgttgatcatagcagtaaactgttagtgcgtgtggatttgttaattaccgtgttggcggttgaatctactccacact |
1594636 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 414
Target Start/End: Complemental strand, 16485046 - 16484944
Alignment:
| Q |
311 |
tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc |
410 |
Q |
| |
|
||||| ||||||| ||| |||||||| |||||||||| ||| ||||| ||| ||| |||| |||| ||||||||||||||||| ||| ||||| ||||| |
|
|
| T |
16485046 |
tgggccagaaatgactg-ttaatttgatgttgatcatagcagtaaactgttagtgtgtgtggatttgttaattaccgtgttggcggttgaatctactcca |
16484948 |
T |
 |
| Q |
411 |
cact |
414 |
Q |
| |
|
|||| |
|
|
| T |
16484947 |
cact |
16484944 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 414
Target Start/End: Original strand, 39560889 - 39560991
Alignment:
| Q |
311 |
tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc |
410 |
Q |
| |
|
||||| ||||||| ||| |||||||| |||||||||| ||| ||||| ||| |||||| | |||| ||||||||||||||||| ||| ||||| ||||| |
|
|
| T |
39560889 |
tgggccagaaatgactg-ttaatttgatgttgatcatagcagtaaactgttagtgcgtatggatttgttaattaccgtgttggcggttgaatctactcca |
39560987 |
T |
 |
| Q |
411 |
cact |
414 |
Q |
| |
|
|||| |
|
|
| T |
39560988 |
cact |
39560991 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 414
Target Start/End: Complemental strand, 40835141 - 40835039
Alignment:
| Q |
311 |
tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc |
410 |
Q |
| |
|
||||| ||||||| ||| |||||||| |||||||||| ||| ||||| ||| |||| ||| |||| ||||||||||||||||| ||| ||||| ||||| |
|
|
| T |
40835141 |
tgggccagaaatgactg-ttaatttgatgttgatcatagcagtaaactgttagtgcatgtggatttgttaattaccgtgttggcggttgaatctactcca |
40835043 |
T |
 |
| Q |
411 |
cact |
414 |
Q |
| |
|
|||| |
|
|
| T |
40835042 |
cact |
40835039 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 414
Target Start/End: Original strand, 640968 - 641063
Alignment:
| Q |
317 |
agaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||||||| || |||||||||| ||| ||| ||| ||| ||| |||| ||| |||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
640968 |
agaaatggct-atgaatttgttgtggattatcacaacaaatggtcggtga-tgtggattcgttaactaccgtgttggcggtcgaatccactccccact |
641063 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 414
Target Start/End: Complemental strand, 39004965 - 39004880
Alignment:
| Q |
329 |
ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||||| |||||||||| || ||||| ||| |||||||| |||| |||||||||||||||| ||| ||||| |||||||||| |
|
|
| T |
39004965 |
ttaatttgatgttgatcatagctgtaaacagttagtgcgtgtggatttgttaattaccgtgttgacggttgaatctactccccact |
39004880 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 414
Target Start/End: Complemental strand, 16482580 - 16482495
Alignment:
| Q |
329 |
ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||||| |||||||||| ||| ||||| ||| |||||||| || ||||||||||||||||| ||| ||||| ||| |||||| |
|
|
| T |
16482580 |
ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatctgttaattaccgtgttggcggttgaatctacttcccact |
16482495 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 3335960 - 3336045
Alignment:
| Q |
329 |
ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||||| |||||||||| ||| ||||| ||| |||||||| |||| ||||||||||||||||| ||| ||||| |||||||||| |
|
|
| T |
3335960 |
ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtggatttgttaattaccgtgttggcggttgaatctactccccact |
3336045 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 311 - 414
Target Start/End: Complemental strand, 22402506 - 22402404
Alignment:
| Q |
311 |
tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc |
410 |
Q |
| |
|
||||| ||||||| ||| |||||||| |||||||||| ||| ||||| ||| |||||||| |||| ||||||||||||||||| ||| ||||| ||||| |
|
|
| T |
22402506 |
tgggccagaaatgactg-ttaatttgatgttgatcatagcagtaaactgttagtgcgtgtggatttgttaattaccgtgttggcggttgaatctactcca |
22402408 |
T |
 |
| Q |
411 |
cact |
414 |
Q |
| |
|
|||| |
|
|
| T |
22402407 |
cact |
22402404 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 311 - 414
Target Start/End: Original strand, 33951663 - 33951765
Alignment:
| Q |
311 |
tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc |
410 |
Q |
| |
|
||||| ||||||| || ||||||||| |||||||||| ||| ||||| ||| |||||||| |||| |||||||||||||||| ||| ||||| |||||| |
|
|
| T |
33951663 |
tgggccagaaatgact-attaatttgatgttgatcatagcagtaaacagttagtgcgtgtggattttttaattaccgtgttggcggttgaatctactccc |
33951761 |
T |
 |
| Q |
411 |
cact |
414 |
Q |
| |
|
|||| |
|
|
| T |
33951762 |
cact |
33951765 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 332 - 414
Target Start/End: Original strand, 47330045 - 47330127
Alignment:
| Q |
332 |
atttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
||||| |||||||||| ||| ||||| ||| |||||||| |||| ||||||||||||||||| ||| ||||| |||||||||| |
|
|
| T |
47330045 |
atttgatgttgatcatagcagtaaacagttagtgcgtgtggatttgttaattaccgtgttggcggttgaatctactccccact |
47330127 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 338 - 414
Target Start/End: Original strand, 4545694 - 4545770
Alignment:
| Q |
338 |
tgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||||||||||| |||| ||||||| ||||||||||| || ||||| |||||| ||||||||||| |||||||| |
|
|
| T |
4545694 |
tgttgatcatcgcagtaaatggttggtatgtgttgattcgctatttaccatgttggcggtcgaatccaatccccact |
4545770 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 414
Target Start/End: Complemental strand, 37969276 - 37969174
Alignment:
| Q |
311 |
tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc |
410 |
Q |
| |
|
||||| ||||||| ||| |||||||| |||||||||| ||| ||||| ||| ||| |||| |||| ||||||||||||||||| ||| ||||| ||||| |
|
|
| T |
37969276 |
tgggccagaaatgactg-ttaatttgatgttgatcatagcagtaaactgttagtgtgtgtggatttgttaattaccgtgttggcggttgaatctactcca |
37969178 |
T |
 |
| Q |
411 |
cact |
414 |
Q |
| |
|
|||| |
|
|
| T |
37969177 |
cact |
37969174 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 414
Target Start/End: Original strand, 25899153 - 25899221
Alignment:
| Q |
346 |
atcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||| |||||||||||||| ||| | ||| |||||||||||||||| ||||||||| |||| ||||| |
|
|
| T |
25899153 |
atcgcactaaacggttggtgcatgtggtttcattaattaccgtgttggcggtcgaatctactctccact |
25899221 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 414
Target Start/End: Original strand, 4062369 - 4062471
Alignment:
| Q |
311 |
tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc |
410 |
Q |
| |
|
||||| ||||||| ||| |||||||| |||| ||||| ||| ||||| ||| ||| |||| |||| ||||||||||||||||| ||| ||||| ||||| |
|
|
| T |
4062369 |
tgggccagaaatgactg-ttaatttgatgttaatcatagcagtaaactgttagtgtgtgtggatttgttaattaccgtgttggcggttgaatctactcca |
4062467 |
T |
 |
| Q |
411 |
cact |
414 |
Q |
| |
|
|||| |
|
|
| T |
4062468 |
cact |
4062471 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 408
Target Start/End: Complemental strand, 23687768 - 23687689
Alignment:
| Q |
328 |
attaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactc |
408 |
Q |
| |
|
||||||||||||| ||| |||||| |||| ||||||||| || |||||| | |||||| |||||| |||||||||||||| |
|
|
| T |
23687768 |
attaatttgttgtggattatcgcagtaaatggttggtgcatg-tgattcatcaattactgtgttgccggtcgaatccactc |
23687689 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 408
Target Start/End: Complemental strand, 24060005 - 24059926
Alignment:
| Q |
328 |
attaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactc |
408 |
Q |
| |
|
||||||||||||| ||| |||||| |||| ||||||||| || |||||| | |||||| |||||| |||||||||||||| |
|
|
| T |
24060005 |
attaatttgttgtggattatcgcagtaaatggttggtgcatg-tgattcatcaattactgtgttgccggtcgaatccactc |
24059926 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 46028310 - 46028379
Alignment:
| Q |
359 |
gttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccacttgcaagcatttgtct |
429 |
Q |
| |
|
|||||||| ||| ||||||||||||| ||||||| |||||||||||| ||| | || ||||||||||||| |
|
|
| T |
46028310 |
gttggtgcttgtgaattcgttaattacagtgttggcggtcgaatccac-ccctattttcaagcatttgtct |
46028379 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 1576078 - 1576131
Alignment:
| Q |
279 |
tgcctaggttgtgcttgtataatcgcttgatgtgggctagaaatggctgattaa |
332 |
Q |
| |
|
|||| ||||||||||||||| ||| |||| ||||||| |||||||| ||||||| |
|
|
| T |
1576078 |
tgccaaggttgtgcttgtatgatcacttgttgtgggccagaaatggttgattaa |
1576131 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 14)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 28641570 - 28641655
Alignment:
| Q |
329 |
ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||||| |||||||||| ||| ||||| ||| |||||||| ||| ||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
28641570 |
ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggtggttgaatctactccccact |
28641655 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 414
Target Start/End: Complemental strand, 2027926 - 2027824
Alignment:
| Q |
311 |
tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc |
410 |
Q |
| |
|
||||| ||||||| ||| |||||||| |||||||||| | | ||||| ||| |||||||| |||| ||||||||||||||||| ||| ||||| ||||| |
|
|
| T |
2027926 |
tgggccagaaatgactg-ttaatttgatgttgatcatagtagtaaactgttagtgcgtgtggatttgttaattaccgtgttggcggttgaatctactcca |
2027828 |
T |
 |
| Q |
411 |
cact |
414 |
Q |
| |
|
|||| |
|
|
| T |
2027827 |
cact |
2027824 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 414
Target Start/End: Complemental strand, 49008271 - 49008169
Alignment:
| Q |
311 |
tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc |
410 |
Q |
| |
|
||||| ||||||| ||| |||||||| |||||||||| ||| ||||| ||| |||||||| |||| |||||||||||| |||| ||| ||||| ||||| |
|
|
| T |
49008271 |
tgggccagaaatgactg-ttaatttgatgttgatcatagcagtaaactgttagtgcgtgtggatttgttaattaccgtattggcggttgaatctactcca |
49008173 |
T |
 |
| Q |
411 |
cact |
414 |
Q |
| |
|
|||| |
|
|
| T |
49008172 |
cact |
49008169 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 32829231 - 32829300
Alignment:
| Q |
359 |
gttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccacttgcaagcatttgtct |
429 |
Q |
| |
|
||||||||| || ||||||||||||||||||||| |||||||||||| ||||| || ||||||||||||| |
|
|
| T |
32829231 |
gttggtgcgcgtgaattcgttaattaccgtgttggcggtcgaatccac-ccccattttcaagcatttgtct |
32829300 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 414
Target Start/End: Complemental strand, 2844039 - 2843954
Alignment:
| Q |
329 |
ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||||| |||||||||| ||| ||||| ||| |||| ||| ||| ||||||||||||||||| ||| ||||| |||||||||| |
|
|
| T |
2844039 |
ttaatttgatgttgatcatagcagtaaactgttagtgcatgtgaatttgttaattaccgtgttggcggttgaatctactccccact |
2843954 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 414
Target Start/End: Complemental strand, 18414618 - 18414533
Alignment:
| Q |
329 |
ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||||| |||||||||| ||| ||||| ||| |||||||| ||| ||||||||||||||||| ||| ||||| ||| |||||| |
|
|
| T |
18414618 |
ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctacttcccact |
18414533 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 32519749 - 32519834
Alignment:
| Q |
329 |
ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||||| |||||||||| ||| ||||| ||| |||||||| ||| ||||||||||||||||| ||| ||||| ||| |||||| |
|
|
| T |
32519749 |
ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctacttcccact |
32519834 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 414
Target Start/End: Complemental strand, 45541547 - 45541463
Alignment:
| Q |
330 |
taatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
||||||| |||||||||| ||| ||||| ||| ||| |||| |||| ||||||||||||||||| ||| ||||| ||||| |||| |
|
|
| T |
45541547 |
taatttgatgttgatcatagcagtaaactgttagtgtgtgtggatttgttaattaccgtgttggcggttgaatctactccacact |
45541463 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 348
Target Start/End: Complemental strand, 36085932 - 36085857
Alignment:
| Q |
273 |
gacttatgcctaggttgtgcttgtataatcgcttgatgtgggctagaaatggctgattaatttgttgttgatcatc |
348 |
Q |
| |
|
|||||||| |||||||||||||||| | ||||| ||||||| ||| ||||||||| ||||||| |||||||||| |
|
|
| T |
36085932 |
gacttatgtataggttgtgcttgtatgtttgcttgttgtgggccagagatggctgataaatttgtggttgatcatc |
36085857 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 5965116 - 5965185
Alignment:
| Q |
359 |
gttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccacttgcaagcatttgtct |
429 |
Q |
| |
|
||||||||| || ||||||||||||||||||||| |||||||| ||| ||||| || ||||||||||||| |
|
|
| T |
5965116 |
gttggtgcgcgtgaattcgttaattaccgtgttggcggtcgaattcac-ccccattttcaagcatttgtct |
5965185 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 429
Target Start/End: Complemental strand, 15853407 - 15853338
Alignment:
| Q |
359 |
gttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccacttgcaagcatttgtct |
429 |
Q |
| |
|
||||||||| || ||||||||||||||||||||| |||||||||||| ||| | || ||||||||||||| |
|
|
| T |
15853407 |
gttggtgcgcgtgaattcgttaattaccgtgttggcggtcgaatccac-ccctattttcaagcatttgtct |
15853338 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 414
Target Start/End: Complemental strand, 8110775 - 8110690
Alignment:
| Q |
329 |
ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||||| |||||||||| ||| |||| || |||||||| ||| ||||||||||||||||| ||| ||||| |||||||||| |
|
|
| T |
8110775 |
ttaatttgatgttgatcatagcagtaaatatttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctactccccact |
8110690 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 414
Target Start/End: Complemental strand, 24779960 - 24779858
Alignment:
| Q |
311 |
tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc |
410 |
Q |
| |
|
||||| ||||||| ||| ||| |||| |||||||||| | | ||||| ||| |||||| | |||| ||||||||||||||| | ||| ||||| |||||| |
|
|
| T |
24779960 |
tgggccagaaatgactgttta-tttgatgttgatcatagaagtaaacagttagtgcgtctggatttgttaattaccgtgttagcggttgaatctactccc |
24779862 |
T |
 |
| Q |
411 |
cact |
414 |
Q |
| |
|
|||| |
|
|
| T |
24779861 |
cact |
24779858 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 333
Target Start/End: Original strand, 32829166 - 32829220
Alignment:
| Q |
279 |
tgcctaggttgtgcttgtataatcgcttgatgtgggctagaaatggctgattaat |
333 |
Q |
| |
|
||||| ||||||| |||||| ||||||||||||||| |||||||||| |||||| |
|
|
| T |
32829166 |
tgcctcggttgtgtttgtatgttcgcttgatgtgggccagaaatggctaattaat |
32829220 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 194652 - 194737
Alignment:
| Q |
329 |
ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact |
414 |
Q |
| |
|
|||||||| |||||||||| ||| ||||| ||| |||||||| ||| ||||||||||||||||| ||| ||||| ||| |||||| |
|
|
| T |
194652 |
ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctacttcccact |
194737 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0256 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0256
Description:
Target: scaffold0256; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 403
Target Start/End: Original strand, 4019 - 4110
Alignment:
| Q |
311 |
tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatc |
403 |
Q |
| |
|
||||| ||||||| ||| |||||||| |||||||||| | ||||||| ||| |||||||| ||| ||||||||||||||||| ||| ||||| |
|
|
| T |
4019 |
tgggccagaaatgactg-ttaatttgatgttgatcatagaaataaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatc |
4110 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 415
Target Start/End: Complemental strand, 20470 - 20367
Alignment:
| Q |
311 |
tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc |
410 |
Q |
| |
|
||||| |||||||| | ||||||||||||| ||| ||||| ||| ||||||| ||||| ||||||||| ||| |||| ||| ||||| ||||| ||| |
|
|
| T |
20470 |
tgggccagaaatggtt-attaatttgttgtggattgtcgcagcaaatggttggtacgtgtagattcgttagttatcgtgctggcggtcggatccattcca |
20372 |
T |
 |
| Q |
411 |
cactt |
415 |
Q |
| |
|
||||| |
|
|
| T |
20371 |
cactt |
20367 |
T |
 |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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