View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8509_high_13 (Length: 402)
Name: NF8509_high_13
Description: NF8509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8509_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 18 - 393
Target Start/End: Original strand, 10858580 - 10858955
Alignment:
| Q |
18 |
actaccatccaatttacttcctttcttaacaaaaatggaaaagttggcagttcgaaattgtggttttgtgaaaaccatatttgatgtgagacgtataaca |
117 |
Q |
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| T |
10858580 |
actaccatccaatttacttcctttcttaacaaaaatggaaaaattggcagttcgaaattgtagttctgtgaaaaccatatttgatgtgagacgtataaca |
10858679 |
T |
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| Q |
118 |
gaagacagaaaaatgaaaaccaagggaccagccctgatgcccttccctttttccctgaaggtattgactttagagcagttgccaaatttgaagaatgttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10858680 |
gaagacagaaaaatgaaaaccaagggaccagccctgatgcccttccctttttccctgaaggtattgactttagagcagttgccaaatttggagaatgttt |
10858779 |
T |
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| Q |
218 |
ggaatgaagatcctcatggaattctaacaattgaacttctaaaacaagtatatgttgatgactgtaaaggccttacaagtttgttcccagcctcagtagc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
10858780 |
ggaatgaagatcctcatggaattctaacaattgaacttctaaaacaagtatatgttgatgactgtaaaggccttataagtttgttcccagcctcagtagc |
10858879 |
T |
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| Q |
318 |
caaagatcttgtgaaacttgaagatctacacgtgaaacactgtgaagagctgatggttattgttgcagagaataat |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10858880 |
caaagatcttgtgaaacttgaagatctacacgtgaaacactgtgaagagctgatggttattgttgcagagaataat |
10858955 |
T |
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