View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8509_high_3 (Length: 499)
Name: NF8509_high_3
Description: NF8509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8509_high_3 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 253 - 499
Target Start/End: Complemental strand, 10240423 - 10240170
Alignment:
| Q |
253 |
ttgttcaaagtat--tttataatattagagttttggttttgtgacattattacattttgagtcttctttcttcggggttcattttaattttcgtttctat |
350 |
Q |
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| T |
10240423 |
ttgttcaaagtatattttataataatagagttttgattttgtgacattattacattttgagtcttctttcttcggggttcaattttattttcgtttctat |
10240324 |
T |
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| Q |
351 |
cggttgataagtt----attacaattaaaggaagtttttgaactctctcatgtttgttttggtcctgtttctcccaaagtggtaatgttgtatcagtttt |
446 |
Q |
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| T |
10240323 |
cggttgataagtttttaattacaattaaaggatgtttttgaactctctcatgtttgttttggtcctgtttctcccaaagtggtaatgttgtatcagtttt |
10240224 |
T |
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| Q |
447 |
caa-aattaattttctattgatgcttattaattgttcactcaattaattttgtt |
499 |
Q |
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| T |
10240223 |
caattattaattttcttttgatgcttattaattgttcactcaattaattttgtt |
10240170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 131 - 249
Target Start/End: Complemental strand, 10240573 - 10240455
Alignment:
| Q |
131 |
aaatctaaaataaacaggccctttatctttttactatgatgctttgtatacatgattcaatcaagaaacccattaaagtgggtgatctgatcaagtttta |
230 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| || |
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| T |
10240573 |
aaatctaaaataaacgggccctttatttttttactatgatgctttgtatacatgattcaatcaagaaaccttgtaaagtgggtgatctgatcgagttata |
10240474 |
T |
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| Q |
231 |
aaattccaatagtttacac |
249 |
Q |
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| T |
10240473 |
aaattccaatagtttacac |
10240455 |
T |
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