View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8509_high_5 (Length: 487)

Name: NF8509_high_5
Description: NF8509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8509_high_5
NF8509_high_5
[»] chr2 (3 HSPs)
chr2 (272-487)||(37881190-37881405)
chr2 (15-210)||(37881467-37881662)
chr2 (280-367)||(2892261-2892348)
[»] chr4 (4 HSPs)
chr4 (310-410)||(36246539-36246639)
chr4 (316-371)||(31941926-31941981)
chr4 (316-371)||(32000885-32000940)
chr4 (309-342)||(24358428-24358461)
[»] chr3 (3 HSPs)
chr3 (309-352)||(20732618-20732661)
chr3 (309-352)||(20740354-20740397)
chr3 (297-358)||(44674739-44674800)
[»] chr8 (3 HSPs)
chr8 (306-352)||(9622084-9622130)
chr8 (312-358)||(39916906-39916952)
chr8 (309-349)||(41350395-41350435)
[»] chr7 (1 HSPs)
chr7 (309-352)||(28944891-28944934)
[»] chr1 (3 HSPs)
chr1 (309-348)||(17118247-17118286)
chr1 (308-348)||(38720068-38720108)
chr1 (292-352)||(45594286-45594346)


Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 272 - 487
Target Start/End: Complemental strand, 37881405 - 37881190
Alignment:
Q  272 ccatgaacattataggcggtctgctatagctgctagattacccggaagaacagacaatgaaataaagaactactggaacacgcacattaggaaaagacta 371  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37881405 ccatgaacattataggtggtctgctatagctgctagattacccggaagaacagacaatgaaataaagaactactggaacacgcacattaggaaaagacta 37881306  T
Q  372 cttcgaagtggaattgatcctgttactcatactccacgtctcgatcatctattggacatgtccttcattaatattctcagatcagctttattaggaggaa 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  37881305 cttcgaagtggaattgatcctgttactcatactccacgtctcgatcatctatttgacatgtcctccattaatattctcagatcagctttattaggaggaa 37881206  T
Q  472 ccaacccaatgaaccc 487  Q
    ||||||||||||||||    
T  37881205 ccaacccaatgaaccc 37881190  T

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Target: chr2; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 37881662 - 37881467
Alignment:
Q  15 atctttaaatctaaggattttgtgcggccgctgcaggtgatcagtacaataattttaccattaactttgtagaggttaataattctccttagtctattgt 114  Q
    |||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||    
T  37881662 atctctaaatctaaggattttgtgcgaccgctgcagatgatcagtacaataattttaccattaactttatagaggttaataagtctccttagtctattgt 37881563  T
Q  115 gtaaaatgtgtctcacttgtcctaaatttttatatgtgaataaaaatacatgattaacttctcatccatgtatttaaccaattttctagtgtgaaa 210  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37881562 gtaaaatgtgtctcacttgtcctaaatttttatatgtaaataaaaatacatgattaacttctcatccatgtatttaaccaattttctagtgtgaaa 37881467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 367
Target Start/End: Complemental strand, 2892348 - 2892261
Alignment:
Q  280 attataggcggtctgctatagctgctagattacccggaagaacagacaatgaaataaagaactactggaacacgcacattaggaaaag 367  Q
    |||||||| ||||||| || ||  || ||||||| ||||| || |||||||||||||| ||||| |||||||| ||||||||||||||    
T  2892348 attataggtggtctgcaattgcatctcgattaccaggaaggacggacaatgaaataaaaaactattggaacacacacattaggaaaag 2892261  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 310 - 410
Target Start/End: Original strand, 36246539 - 36246639
Alignment:
Q  310 tacccggaagaacagacaatgaaataaagaactactggaacacgcacattaggaaaagactacttcgaagtggaattgatcctgttactcatactccacg 409  Q
    |||| |||||||||||||||||||| ||||| || |||||||| |||||||||||||||||  |  |||  |||||||||||||| || |||| ||||||    
T  36246539 taccaggaagaacagacaatgaaatcaagaattattggaacactcacattaggaaaagactcttaagaatgggaattgatcctgtgacacataatccacg 36246638  T
Q  410 t 410  Q
    |    
T  36246639 t 36246639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 316 - 371
Target Start/End: Original strand, 31941926 - 31941981
Alignment:
Q  316 gaagaacagacaatgaaataaagaactactggaacacgcacattaggaaaagacta 371  Q
    ||||||||||||||||||| ||||||||||||||||| ||| | | ||||||||||    
T  31941926 gaagaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagacta 31941981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 316 - 371
Target Start/End: Original strand, 32000885 - 32000940
Alignment:
Q  316 gaagaacagacaatgaaataaagaactactggaacacgcacattaggaaaagacta 371  Q
    ||||||||||||||||||| ||||||||||||||||| ||| | | ||||||||||    
T  32000885 gaagaacagacaatgaaatcaagaactactggaacacacacctcaagaaaagacta 32000940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 24358461 - 24358428
Alignment:
Q  309 ttacccggaagaacagacaatgaaataaagaact 342  Q
    |||||||||||||||||||||||||| |||||||    
T  24358461 ttacccggaagaacagacaatgaaatcaagaact 24358428  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 352
Target Start/End: Complemental strand, 20732661 - 20732618
Alignment:
Q  309 ttacccggaagaacagacaatgaaataaagaactactggaacac 352  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  20732661 ttacctggaagaacagacaatgaaataaagaactactggaacac 20732618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 352
Target Start/End: Complemental strand, 20740397 - 20740354
Alignment:
Q  309 ttacccggaagaacagacaatgaaataaagaactactggaacac 352  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  20740397 ttacctggaagaacagacaatgaaataaagaactactggaacac 20740354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 44674739 - 44674800
Alignment:
Q  297 atagctgctagattacccggaagaacagacaatgaaataaagaactactggaacacgcacat 358  Q
    ||||||||||||||||| ||||||||||| ||||| || ||||| ||||||||||| |||||    
T  44674739 atagctgctagattaccaggaagaacagataatgagatcaagaattactggaacactcacat 44674800  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 9622084 - 9622130
Alignment:
Q  306 agattacccggaagaacagacaatgaaataaagaactactggaacac 352  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||    
T  9622084 agattaccaggacgaacagacaatgaaataaagaactactggaacac 9622130  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 312 - 358
Target Start/End: Original strand, 39916906 - 39916952
Alignment:
Q  312 cccggaagaacagacaatgaaataaagaactactggaacacgcacat 358  Q
    |||||||||||||||||||| || |||||||| |||||||| |||||    
T  39916906 cccggaagaacagacaatgagatcaagaactattggaacactcacat 39916952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 349
Target Start/End: Complemental strand, 41350435 - 41350395
Alignment:
Q  309 ttacccggaagaacagacaatgaaataaagaactactggaa 349  Q
    ||||| || ||||||||||||||||||||||| ||||||||    
T  41350435 ttacctggtagaacagacaatgaaataaagaattactggaa 41350395  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 352
Target Start/End: Complemental strand, 28944934 - 28944891
Alignment:
Q  309 ttacccggaagaacagacaatgaaataaagaactactggaacac 352  Q
    ||||||||||||||||||||||| ||||||||||  ||||||||    
T  28944934 ttacccggaagaacagacaatgagataaagaacttttggaacac 28944891  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 348
Target Start/End: Complemental strand, 17118286 - 17118247
Alignment:
Q  309 ttacccggaagaacagacaatgaaataaagaactactgga 348  Q
    ||||| |||||||||||||||||||||||||| |||||||    
T  17118286 ttaccaggaagaacagacaatgaaataaagaattactgga 17118247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 348
Target Start/End: Original strand, 38720068 - 38720108
Alignment:
Q  308 attacccggaagaacagacaatgaaataaagaactactgga 348  Q
    |||||| |||||||| |||||||||||||||||||| ||||    
T  38720068 attaccgggaagaaccgacaatgaaataaagaactattgga 38720108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 352
Target Start/End: Complemental strand, 45594346 - 45594286
Alignment:
Q  292 ctgctatagctgctagattacccggaagaacagacaatgaaataaagaactactggaacac 352  Q
    |||||||||| |||  | |||| ||||||||||||||||| || |||||||| ||||||||    
T  45594346 ctgctatagcagctcaactaccaggaagaacagacaatgagattaagaactattggaacac 45594286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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