View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8509_high_7 (Length: 458)
Name: NF8509_high_7
Description: NF8509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8509_high_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 55162102 - 55161636
Alignment:
| Q |
1 |
ggactgactcacagtgttgatgatatattgttggttgattctccattggtgatgagtaaatggctgcagtgattgacttgctatatctatatccacatct |
100 |
Q |
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| T |
55162102 |
ggactgactcacagtgttgatgatatattgttggttgattctccattggtgctgagtaaatggctgcaatgattgacttgctatatctatatccacatct |
55162003 |
T |
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| Q |
101 |
tttccatctgagttatgaaagaagatggtagatgaatttgaaggagaattgagaagagatccacctttgagaaatgaccaacatccacgtttggccaaaa |
200 |
Q |
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| T |
55162002 |
tttccatctgagttatgaaagaagatggtagatgaatttgaaggagaattgagaagaaatccacctttgagaaatgaccaacatccacgtttggccaaaa |
55161903 |
T |
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| Q |
201 |
ctgtcccaatacagttatatgtctcattttctgtttctagctttgcctttatcataactgaatctgaatcttcaaccttcacccatactnnnnnnnnnnn |
300 |
Q |
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| T |
55161902 |
ctgtcccaatacagttatatgtctcattttctgtttctagctttgcctttatcataactgaatctgaatattcaaccttcacccatact---gtagtagt |
55161806 |
T |
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| Q |
301 |
nnnnnnnactttactaac-caaaacaaaaggg----tgtgtagagtttaat-------ggaaggaaggagcgtaaacgtaccagaaaaagaatagatagt |
388 |
Q |
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| T |
55161805 |
agtagtaactttactaacaaaaaacaaaagggtgcatgcgtagagtttaatggaagaaggaaggaaggagcgtaaacgtaccagaaaaagaatagatagt |
55161706 |
T |
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| Q |
389 |
gtcgtaagtaagattatagaggacaagtgaagaaggcatgttgatgttggtgttgttaacagcattaccc |
458 |
Q |
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| T |
55161705 |
gtcgtaagtaagattatagaggacaagtgaagaaggcatgttgatgttggtgttgttaacagcattaccc |
55161636 |
T |
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