View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8509_high_8 (Length: 456)
Name: NF8509_high_8
Description: NF8509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8509_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 6132245 - 6132019
Alignment:
| Q |
18 |
ttcagaaactcaattggtttggttactttttgcaacacactttgcaatacatatgatgctggtggcaatccttgtgaggatgatgttccatttattggtg |
117 |
Q |
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| T |
6132245 |
ttcagaaactcaattggtttggttactttttgcaacacactttgcaatacatatgatgctggtggcaatccttgtgaggatgatgttccatctattggtg |
6132146 |
T |
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| Q |
118 |
ttgtctcttttgcacagtttgtcactcctggctcattccactgtgtcccactatttttatatgcacaaataaaaataattagagacattaggaccataaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6132145 |
ttgtctcttttgcacagtttgtcactcctggctcattccattgtgtcccactatttttatatgcacaaataaaaataattaaagacattaggaccataaa |
6132046 |
T |
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| Q |
218 |
t-aatgtgtcatgctaatttgtacaat |
243 |
Q |
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| ||||||||||||||||||||||||| |
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| T |
6132045 |
taaatgtgtcatgctaatttgtacaat |
6132019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 239 - 439
Target Start/End: Complemental strand, 6131997 - 6131796
Alignment:
| Q |
239 |
acaatcttagtttcaataagaaaattaataagtatgatga-tttgttaaactcacttgtagtgcataggagaaattccttgaaaaagaactttggttttg |
337 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6131997 |
acaatcttagtttcaataagaaaattaataagtatgatgaatttgttaaactcacttgtagtgcataggagaaattccttgaaaaagaactttggttttg |
6131898 |
T |
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| Q |
338 |
cttgtatcaacctctgtattaacccaattagcccaagttgtcaaaccagttcgaaaagcttccatacgatccatgtctttcactattttgtcaccaattt |
437 |
Q |
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| T |
6131897 |
cttgtatcaacctctttattaacccagttagcccaagttgtcaaaccagttcgaaaagcttccatacgatccatgtctttcactattttgtcaccaattt |
6131798 |
T |
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| Q |
438 |
ga |
439 |
Q |
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|| |
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| T |
6131797 |
ga |
6131796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 34 - 202
Target Start/End: Complemental strand, 6135316 - 6135147
Alignment:
| Q |
34 |
gtttggttactttttgcaacacactttgcaatacatatgatgctggtggcaatccttgtgaggatgatgttccatttattggtgttgtctcttttgcaca |
133 |
Q |
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||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
6135316 |
gtttggttattttttgcaacacattttgcaatacatatgatgctggtgccaatccttgtgaaaatgatgatccatttattggtgttgtctcttttgcaca |
6135217 |
T |
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| Q |
134 |
gtttgtcactcctggctcattccactgtgtcccactatttttatatgcac-aaataaaaataattagaga |
202 |
Q |
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| T |
6135216 |
gtttgtcactcctggctcatgccattctgctccactatttttatatgcacaaaataaaaataattagaga |
6135147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 33 - 202
Target Start/End: Complemental strand, 6138039 - 6137870
Alignment:
| Q |
33 |
ggtttggttactttttgcaacacactttgcaatacatatgatgctggtggcaatccttgtgaggatgatgttccatttattggtgttgtctcttttgcac |
132 |
Q |
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|||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||| |
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| T |
6138039 |
ggtttggttattttctgcaacacattttgcaatacatatgatgctggtggcaatccaagtgaggatgatgatccatttattggtgttgtctcttttccac |
6137940 |
T |
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| Q |
133 |
agtttgtcactcctggctcattccactgtgtcccactatttttatatgcacaaataaaaataattagaga |
202 |
Q |
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||| ||||||||||||||||| ||| | || |||||||||||||||||||||||||||||||||||||| |
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| T |
6137939 |
agtctgtcactcctggctcatgccattctgatccactatttttatatgcacaaataaaaataattagaga |
6137870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 274 - 423
Target Start/End: Complemental strand, 6162910 - 6162761
Alignment:
| Q |
274 |
gatgatttgttaaactcacttgtagtgcataggagaaattccttgaaaaagaactttggttttgcttgtatcaacctctgtattaacccaattagcccaa |
373 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||| ||||||||||||||||||| |
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| T |
6162910 |
gatgatttgtcaaactcacttgtagtgcataggagaaattccttggaaaagaactttggttttgtttgtatcaacttctgcattaacccaattagcccaa |
6162811 |
T |
|
| Q |
374 |
gttgtcaaaccagttcgaaaagcttccatacgatccatgtctttcactat |
423 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
6162810 |
gttgtcaaaccacttctgaaagcttccatacgatccatgtctttcactat |
6162761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 285 - 439
Target Start/End: Complemental strand, 6137753 - 6137599
Alignment:
| Q |
285 |
aaactcacttgtagtgcataggagaaattccttgaaaaagaactttggttttgcttgtatcaacctctgtattaacccaattagcccaagttgtcaaacc |
384 |
Q |
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|||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||| |
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| T |
6137753 |
aaactcacttgttgtgtgtaggagaaattccttggaaaagaactttggttttgcttgtatcaacttctgcattaacccagttagcccaagttgtcaaacc |
6137654 |
T |
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| Q |
385 |
agttcgaaaagcttccatacgatccatgtctttcactattttgtcaccaatttga |
439 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
6137653 |
agttctaaaagcttccatacgatccatgtctttcactattttgttacctatttga |
6137599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 33 - 207
Target Start/End: Original strand, 13284375 - 13284549
Alignment:
| Q |
33 |
ggtttggttactttttgcaacacactttgcaatacatatgatgctggtggcaatccttgtgaggatgatgttccatttattggtgttgtctcttttgcac |
132 |
Q |
| |
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||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||| ||| |
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| T |
13284375 |
ggttttgttattttttgcaacacattttgcaatacatatgatgctggtggcaatccaagtgaggatgatgatccatttattggtgttatctcttttccac |
13284474 |
T |
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| Q |
133 |
agtttgtcactcctggctcattccactgtgtcccactatttttatatgcacaaataaaaataattagagacatta |
207 |
Q |
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| T |
13284475 |
agcctgtcactcctggctcatgccattctgatccactatttttatatgcacaaataaaaataattagagacatta |
13284549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 274 - 439
Target Start/End: Original strand, 13284721 - 13284886
Alignment:
| Q |
274 |
gatgatttgttaaactcacttgtagtgcataggagaaattccttgaaaaagaactttggttttgcttgtatcaacctctgtattaacccaattagcccaa |
373 |
Q |
| |
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||||| |||| |||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
13284721 |
gatgacttgtaaaactcacttgtagtgtacaggagaaattccttggaaaagaactttggttttgcttgtatcaacttctgcattaacccaattagcccaa |
13284820 |
T |
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| Q |
374 |
gttgtcaaaccagttcgaaaagcttccatacgatccatgtctttcactattttgtcaccaatttga |
439 |
Q |
| |
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|||||||||||||||| ||||||||||||| | ||||| |||||||||||||||| ||| |||||| |
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| T |
13284821 |
gttgtcaaaccagttctaaaagcttccatatggtccatctctttcactattttgttacctatttga |
13284886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 36 - 202
Target Start/End: Complemental strand, 6163123 - 6162957
Alignment:
| Q |
36 |
ttggttactttttgcaacacactttgcaatacatatgatgctggtggcaatccttgtgaggatgatgttccatttattggtgttgtctcttttgcacagt |
135 |
Q |
| |
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||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||| |||||| |
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| T |
6163123 |
ttggttattttttgcaacacattttgcaatacatatgatgctggtggcaatccaagtgaggatgttgatccatttattggtgttgtctcttttccacagt |
6163024 |
T |
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| Q |
136 |
ttgtcactcctggctcattccactgtgtcccactatttttatatgcacaaataaaaataattagaga |
202 |
Q |
| |
|
|||||||||||||||||| ||| | || |||||||||||||||||||| | ||||||||||||||| |
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|
| T |
6163023 |
ttgtcactcctggctcatgccattctgctccactatttttatatgcacacaaaaaaataattagaga |
6162957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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