View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8509_high_9 (Length: 451)
Name: NF8509_high_9
Description: NF8509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8509_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 94 - 439
Target Start/End: Complemental strand, 16324886 - 16324526
Alignment:
| Q |
94 |
aagtattaaacaaatcttaacataacaaaaaatgcaagttccttattgcttccatttaattcaatatatatagtaacgctagcagcaaaacttgttacat |
193 |
Q |
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| T |
16324886 |
aagtattaaacaaatcttaacataacaaaaaatgcaagttccttattgcttccatttaattcaatatatatagtaacgctagcagcaaaacttgttacat |
16324787 |
T |
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| Q |
194 |
acaacattgctttac-----------------ctcattctctcaatatcacaaaatgaagttaagttacccttcacttcctcttctcaccattttccttt |
276 |
Q |
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| T |
16324786 |
acaacattgctttacatgattccttgtcctccctcattctctcaat--cacaaaatgaagttaagttacccttcacttcctcttctcaccattttccttt |
16324689 |
T |
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| Q |
277 |
tcctacttccttctttgatcaaatctcaaatgtgccaaagaaactgtggcaaagaaactctcaagtaccctttcggtagcggccccggttgcggcgaccc |
376 |
Q |
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| T |
16324688 |
tcctacttccttctttgatcaaatctcaaatgtgccaaagaaactgtggcaaagaaactctcaaataccctttcggtagcggccccggttgcggcgaccc |
16324589 |
T |
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| Q |
377 |
tcgcttccaaccacatataacttgtagccaacaaaaactcaccttcacaacacacacaggttc |
439 |
Q |
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| T |
16324588 |
tcgcttccaaccacatataacttgtagccaacaaaaactcaccttcacaacacacacaggttc |
16324526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 16325015 - 16324905
Alignment:
| Q |
1 |
ttaaaacgcgacagagtacataaataaaaaagccttacattatatcatatcacatataaaaataaatcacaaggcctagcaacatataatcaaaagtatt |
100 |
Q |
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|||||||| || ||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
16325015 |
ttaaaacgtgatagagtacataaatcaaaaagccttacattatattatatcacaaataaaaataaatcacaaggcctaacagcatataatcaaaagtatt |
16324916 |
T |
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| Q |
101 |
aaacaaatctt |
111 |
Q |
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||||||||||| |
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| T |
16324915 |
aaacaaatctt |
16324905 |
T |
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