View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8509_low_1 (Length: 598)

Name: NF8509_low_1
Description: NF8509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8509_low_1
NF8509_low_1
[»] chr5 (9 HSPs)
chr5 (147-576)||(3586499-3586926)
chr5 (10-144)||(18593420-18593554)
chr5 (12-144)||(29087659-29087790)
chr5 (10-144)||(34378275-34378411)
chr5 (11-144)||(7161783-7161919)
chr5 (10-133)||(698538-698660)
chr5 (24-144)||(18313413-18313532)
chr5 (61-144)||(7451601-7451684)
chr5 (90-142)||(18255195-18255246)
[»] chr8 (17 HSPs)
chr8 (10-144)||(20138603-20138738)
chr8 (16-144)||(24995164-24995292)
chr8 (10-144)||(12898045-12898179)
chr8 (10-141)||(31207134-31207266)
chr8 (10-142)||(41893175-41893306)
chr8 (10-144)||(34388776-34388910)
chr8 (16-144)||(9519683-9519818)
chr8 (22-141)||(16457246-16457367)
chr8 (47-144)||(36631038-36631135)
chr8 (10-144)||(32066053-32066199)
chr8 (18-137)||(37986631-37986754)
chr8 (35-144)||(22773817-22773933)
chr8 (25-108)||(35821432-35821515)
chr8 (23-144)||(38577555-38577681)
chr8 (90-144)||(27889105-27889158)
chr8 (90-144)||(27947763-27947816)
chr8 (39-94)||(35816066-35816121)
[»] chr7 (19 HSPs)
chr7 (10-144)||(44353333-44353468)
chr7 (10-144)||(31971904-31972038)
chr7 (10-144)||(47325653-47325789)
chr7 (10-140)||(38306438-38306568)
chr7 (10-141)||(3419428-3419559)
chr7 (10-142)||(10244359-10244490)
chr7 (10-141)||(3419169-3419300)
chr7 (26-144)||(40726274-40726392)
chr7 (10-141)||(3867293-3867424)
chr7 (12-144)||(25160992-25161121)
chr7 (10-143)||(5860053-5860192)
chr7 (10-144)||(37795166-37795308)
chr7 (10-142)||(41089514-41089652)
chr7 (10-70)||(34390138-34390199)
chr7 (7-97)||(3478523-3478613)
chr7 (27-144)||(35745589-35745710)
chr7 (12-61)||(33435288-33435337)
chr7 (103-144)||(37795595-37795636)
chr7 (10-97)||(6585058-6585146)
[»] chr1 (16 HSPs)
chr1 (10-144)||(46692589-46692723)
chr1 (10-141)||(5459338-5459469)
chr1 (10-140)||(5389196-5389325)
chr1 (10-141)||(24449702-24449834)
chr1 (10-140)||(41920634-41920765)
chr1 (41-144)||(30685693-30685797)
chr1 (55-144)||(24684261-24684350)
chr1 (38-143)||(6804745-6804848)
chr1 (57-144)||(31584808-31584894)
chr1 (15-71)||(6764224-6764280)
chr1 (16-65)||(31585608-31585657)
chr1 (22-140)||(46814238-46814360)
chr1 (10-97)||(7857829-7857915)
chr1 (19-70)||(24659113-24659165)
chr1 (52-99)||(32882585-32882632)
chr1 (19-95)||(27031660-27031736)
[»] chr3 (17 HSPs)
chr3 (10-144)||(47235875-47236010)
chr3 (10-143)||(53248077-53248211)
chr3 (10-141)||(34475530-34475658)
chr3 (10-144)||(45164032-45164166)
chr3 (10-144)||(19176681-19176818)
chr3 (10-141)||(31483061-31483189)
chr3 (10-144)||(43012552-43012689)
chr3 (10-144)||(2392272-2392410)
chr3 (10-144)||(2394035-2394174)
chr3 (10-144)||(17551129-17551269)
chr3 (17-101)||(20611966-20612050)
chr3 (14-144)||(9583822-9583954)
chr3 (10-108)||(30352247-30352343)
chr3 (10-97)||(40023389-40023477)
chr3 (10-97)||(23328167-23328255)
chr3 (7-144)||(7105014-7105155)
chr3 (39-97)||(45399002-45399060)
[»] chr2 (13 HSPs)
chr2 (10-144)||(10524277-10524410)
chr2 (10-144)||(387351-387488)
chr2 (10-144)||(39338630-39338769)
chr2 (10-136)||(17116655-17116784)
chr2 (10-97)||(7874467-7874554)
chr2 (10-94)||(14106342-14106427)
chr2 (10-97)||(7460852-7460940)
chr2 (39-144)||(5254459-5254565)
chr2 (78-140)||(25281116-25281178)
chr2 (7-69)||(16952229-16952292)
chr2 (7-69)||(17022894-17022957)
chr2 (7-69)||(17060200-17060263)
chr2 (179-239)||(15533566-15533626)
[»] chr4 (11 HSPs)
chr4 (10-144)||(30167334-30167468)
chr4 (10-137)||(8255204-8255332)
chr4 (10-137)||(8268622-8268750)
chr4 (21-144)||(30964625-30964749)
chr4 (29-144)||(20464786-20464901)
chr4 (10-108)||(8705950-8706048)
chr4 (67-141)||(36689577-36689651)
chr4 (104-144)||(27555700-27555740)
chr4 (5-106)||(35341148-35341249)
chr4 (10-138)||(31050434-31050566)
chr4 (7-83)||(19673271-19673348)
[»] chr6 (5 HSPs)
chr6 (10-128)||(10542009-10542127)
chr6 (12-144)||(14663256-14663392)
chr6 (10-140)||(3117670-3117802)
chr6 (82-144)||(3254207-3254269)
chr6 (109-144)||(15944276-15944311)
[»] scaffold0343 (1 HSPs)
scaffold0343 (10-143)||(5883-6015)
[»] scaffold0068 (1 HSPs)
scaffold0068 (10-137)||(35553-35676)
[»] scaffold0434 (1 HSPs)
scaffold0434 (89-144)||(2442-2497)
[»] scaffold0172 (1 HSPs)
scaffold0172 (29-144)||(19113-19230)
[»] scaffold0085 (1 HSPs)
scaffold0085 (58-140)||(48560-48643)


Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 147 - 576
Target Start/End: Complemental strand, 3586926 - 3586499
Alignment:
Q  147 ataattctatggaaagtgcttattgttatgacttatgagagaagtttcacaagaaatgcaagaatcctgtacggcagcatgtaacacttacaactaacaa 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3586926 ataattctatggaaagtgcttattgttatgacttatgagagaagtttcacaagaaatgcaagaatcctgtacggcagcatgtaacacttacaactaacaa 3586827  T
Q  247 caacccactctcagcatgtatgatcagccataacctaattggtcaaacatcacatttttatgcattcttctcttgtataaatctttcgtagcaannnnnn 346  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||          
T  3586826 caacccactctcagcatgtatgatcagccataacctaattggtcaaacatcacatttttatgcattcttctcttgtataaatctttcgtaacaaattttt 3586727  T
Q  347 nnnnnnaacaagctttattt-aacaagtataatgcatgagaagaaaaaagaaaggaagcacacacacagagatgatacatacctgaacaatcctatgcca 445  Q
          |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3586726 ttt---aacaagctttattttaacaagtataatgcatgagaagaaaaaagaaaggaagcacacacacagagatgatacatacctgaacaatcctatgcca 3586630  T
Q  446 ttgttgttccttctcaagacaaagcaatatatttctcaatgaaccaattggaaaattttgctcccaagcaacccaggcatcaagagcaccataaatagcc 545  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3586629 ttgttgttccttctcaagacaaagcaatatatttctcaatgaaccaattggaaaattttgctcccaagcaacccaggcatcaagagcaccataaatagcc 3586530  T
Q  546 tccttactatcagtagcatctatatcacgaa 576  Q
    ||||||||||||||| |||| ||||||||||    
T  3586529 tccttactatcagtatcatccatatcacgaa 3586499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 18593420 - 18593554
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttg 109  Q
    |||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||    
T  18593420 ggtgttggggtctgggagttttatttggaggatgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgcttgtttttttg 18593519  T
Q  110 gagtttgttttaggtggtgatgtgttttggtgggt 144  Q
    |||||||| ||||||||||||||||||||| ||||    
T  18593520 gagtttgtgttaggtggtgatgtgttttggcgggt 18593554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 29087659 - 29087790
Alignment:
Q  12 tgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttgga 111  Q
    |||||||||||||||| ||||| |||||||| ||||||  ||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  29087659 tgttggggtctgggagctttattttgagggt-ttctttaggggtgagtagtgacgatgggcggtggtgaataccgtgtttacagtgcttgtttttttgga 29087757  T
Q  112 gtttgttttaggtggtgatgtgttttggtgggt 144  Q
    || ||||||||||| ||||||||||||||||||    
T  29087758 gtctgttttaggtgctgatgtgttttggtgggt 29087790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 34378275 - 34378411
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttg 109  Q
    ||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||     
T  34378275 ggtgttggggtttgagagttttattttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttaca-tgcttgtttttttt 34378373  T
Q  110 g---agtttgttttaggtggtgatgtgttttggtgggt 144  Q
        ||||||||||||||||||||||||||| ||||||    
T  34378374 ttttagtttgttttaggtggtgatgtgtttttgtgggt 34378411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 7161919 - 7161783
Alignment:
Q  11 gtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgatttttt-- 108  Q
    ||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||| |||  ||||||||| | ||||||||||||||||| |||| |      
T  7161919 gtgttggggtctgggagttttattttgatggtgttctttgggggtgagtagtgacgttgggtggtggtggaaatcgtgtttacagtgcttgtttttgtga 7161820  T
Q  109 -ggagtttgttttaggtggtgatgtgttttggtgggt 144  Q
     ||||| |||||||||| |||||||||||||||||||    
T  7161819 aggagtctgttttaggtagtgatgtgttttggtgggt 7161783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 698538 - 698660
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttg 109  Q
    |||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||| | || ||||||||||||  ||||||||| | | |||||||    
T  698538 ggtgttggggtctgagagttttatttggagggtgttctttgtgggtgagtagtgacgatcggcgatggtggataccg-atttacagtgttggtttttttg 698636  T
Q  110 gagtttgttttaggtggtgatgtg 133  Q
    |||||||||||| |||||||||||    
T  698637 gagtttgttttaagtggtgatgtg 698660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 24 - 144
Target Start/End: Complemental strand, 18313532 - 18313413
Alignment:
Q  24 ggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttggagtttgttttagg 123  Q
    |||||||| |||| |||||||||||  |||||||||||||||||||   |||| |||||| ||||||||| ||| ||| ||||||||||| |||||||||    
T  18313532 ggagtttt-tctttagggtgttcttcatgggtgagtagtgacgatgagtggtgatggatatcgtgtttacggtgtttgtttttttggagtctgttttagg 18313434  T
Q  124 tggtgatgtgttttggtgggt 144  Q
    |||||||||||||||||||||    
T  18313433 tggtgatgtgttttggtgggt 18313413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 61 - 144
Target Start/End: Original strand, 7451601 - 7451684
Alignment:
Q  61 gtgacgatggacggtggtggataccgtgtttacagtgcttgattttttggagtttgttttaggtggtgatgtgttttggtgggt 144  Q
    ||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||| |||||||||||    
T  7451601 gtgacgatggaaggtggtggataccgtgtttgcagtgcttgtttttttggagtttgtgttaggtggtgatgtattttggtgggt 7451684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 18255246 - 18255195
Alignment:
Q  90 ttacagtgcttgattttttggagtttgttttaggtggtgatgtgttttggtgg 142  Q
    |||||||||||| ||||||| ||| |||||||||||| |||||||||||||||    
T  18255246 ttacagtgcttgtttttttg-agtctgttttaggtggagatgtgttttggtgg 18255195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 1e-58; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 20138603 - 20138738
Alignment:
Q  10 ggtgttggggtctgggagttttatctt-gagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgatttttt 108  Q
    |||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20138603 ggtgttggggtctgggagttttatttttgagggtgttctttgtaggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgatttttt 20138702  T
Q  109 ggagtttgttttaggtggtgatgtgttttggtgggt 144  Q
    ||||| ||||||||||||||||||||||||||||||    
T  20138703 ggagtctgttttaggtggtgatgtgttttggtgggt 20138738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 24995292 - 24995164
Alignment:
Q  16 ggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttggagttt 115  Q
    ||||||| |||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||| ||    
T  24995292 ggggtctaggagttttattttgagggtgttctttgtgcgtgagtagtgacgatgggcggtggtggataccgtgtttacaatgcttgtttttttggagatt 24995193  T
Q  116 gttttaggtggtgatgtgttttggtgggt 144  Q
    ||||||||||||||  |||||||||||||    
T  24995192 gttttaggtggtgacatgttttggtgggt 24995164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 12898179 - 12898045
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttg 109  Q
    |||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||| || ||||| ||  | ||| |||||||    
T  12898179 ggtgttggggtcttagagttttattttgagggtgttctttgtgggtgagtagtgacgatgaacggttgtggattccatgtttgcatggattgtttttttg 12898080  T
Q  110 gagtttgttttaggtggtgatgtgttttggtgggt 144  Q
    |||||||||||||||||||||||||||||||||||    
T  12898079 gagtttgttttaggtggtgatgtgttttggtgggt 12898045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 10 - 141
Target Start/End: Complemental strand, 31207266 - 31207134
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgc-ttgatttttt 108  Q
    |||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||| ||  ||||||    
T  31207266 ggtgttggagtatgggagttttattttgagggtgttctttgtgggtgagtagtgacgatgggcgatggtggatactgtgtttacagtgcttttttttttt 31207167  T
Q  109 ggagtttgttttaggtggtgatgtgttttggtg 141  Q
     |||| |||||||||||||||||||||||||||    
T  31207166 tgagtctgttttaggtggtgatgtgttttggtg 31207134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 10 - 142
Target Start/End: Complemental strand, 41893306 - 41893175
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttg 109  Q
    ||||||| |||||||||||| ||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||     
T  41893306 ggtgttgaggtctgggagttctattttcagggtgttctttgtgggtgagtagtgacgatggtcggtggtggataccgtgtttacagttcttg-ttttttt 41893208  T
Q  110 gagtttgttttaggtggtgatgtgttttggtgg 142  Q
     ||| |||||||||| |||||||||||||||||    
T  41893207 tagtctgttttaggtagtgatgtgttttggtgg 41893175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 34388910 - 34388776
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgc-ttgatttttt 108  Q
    ||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||| ||| ||  ||||||    
T  34388910 ggtgttggggtatgagagttttattttgagggtgttctttgtgggtgagtagtgacgataggcggtggtggata-cgtgtttacattgctttcttttttt 34388812  T
Q  109 ggagtttgttttaggtggtgatgtgttttggtgggt 144  Q
    |||||||||||||||||||||||||||||| |||||    
T  34388811 ggagtttgttttaggtggtgatgtgttttgctgggt 34388776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 16 - 144
Target Start/End: Original strand, 9519683 - 9519818
Alignment:
Q  16 ggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtg-------cttgatttttt 108  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||        ||  ||||||    
T  9519683 ggggtctgagagttttattttgagggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgattttttttttttttttt 9519782  T
Q  109 ggagtttgttttaggtggtgatgtgttttggtgggt 144  Q
     ||| |||||||||||||||| ||||||||||||||    
T  9519783 tgaggttgttttaggtggtgacgtgttttggtgggt 9519818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 22 - 141
Target Start/End: Complemental strand, 16457367 - 16457246
Alignment:
Q  22 tgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttgg-agt-ttgttt 119  Q
    |||||||||||| || |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||   ||| || |||    
T  16457367 tgggagttttattttcagggtggtctttatgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgttttttttttagtctttttt 16457268  T
Q  120 taggtggtgatgtgttttggtg 141  Q
    ||||||||||||||||||||||    
T  16457267 taggtggtgatgtgttttggtg 16457246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 36631038 - 36631135
Alignment:
Q  47 tttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttggagtttgttttaggtggtgatgtgttttggtgggt 144  Q
    |||| ||||||||||| ||||||| |||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||    
T  36631038 tttgggggtgagtagttacgatgggcggtggtggataccgtgtttacagtgtttgtttttttggagtctgttttaggtggtgatgtgttttggtgggt 36631135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 32066199 - 32066053
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtt------------tacagtg 97  Q
    |||||||||||||| ||||||||| | |||||||||||||||| ||||||||||||||||| ||||||||||||| |||||            |||||||    
T  32066199 ggtgttggggtctgagagttttatttggagggtgttctttgtgagtgagtagtgacgatgggcggtggtggatacagtgttggttgtggtggatacagtg 32066100  T
Q  98 cttgattttttggagtttgttttaggtggtgatgtgttttggtgggt 144  Q
     | | ||||||||||||||||||||||||||||||||||||||||||    
T  32066099 ttggtttttttggagtttgttttaggtggtgatgtgttttggtgggt 32066053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 37986754 - 37986631
Alignment:
Q  18 ggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttg----attttttggagt 113  Q
    |||||||||||||||| | |||||||||||||||||||||||| |||||||||  |||||| ||||||||||||||| ||||||     ||||||  |||    
T  37986754 ggtctgggagttttatttggagggtgttctttgtgggtgagtaatgacgatgggtggtggtagataccgtgtttacaatgcttgtttttttttttttagt 37986655  T
Q  114 ttgttttaggtggtgatgtgtttt 137  Q
    ||||||||||||||||||||||||    
T  37986654 ttgttttaggtggtgatgtgtttt 37986631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 35 - 144
Target Start/End: Original strand, 22773817 - 22773933
Alignment:
Q  35 ttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttg-------attttttggagtttgttttaggtggt 127  Q
    |||||||||||||||||||||||||||||||||||| | ||||||| |||| |||||||| ||||||        |||||| || |||||||||||||||    
T  22773817 ttgagggtgttctttgtgggtgagtagtgacgatgggcagtggtggttaccatgtttacaatgcttgtttttttttttttttgaatttgttttaggtggt 22773916  T
Q  128 gatgtgttttggtgggt 144  Q
    ||| |||||||||||||    
T  22773917 gatatgttttggtgggt 22773933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 35821432 - 35821515
Alignment:
Q  25 gagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgatttttt 108  Q
    ||||||||| || ||||||||||||| || |||||||||| ||||| ||||| | ||||| |||||||||||||||| ||||||    
T  35821432 gagttttattttaagggtgttctttgaggatgagtagtgatgatgggcggtgctagatactgtgtttacagtgcttgttttttt 35821515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 23 - 144
Target Start/End: Complemental strand, 38577681 - 38577555
Alignment:
Q  23 gggagttttatcttgagg-gtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtg----cttgattttttggagtttgt 117  Q
    ||||||||||| ||| || |||||||||| || ||||||||||||||||| | | |||||||| ||||||||||||     || || ||| || ||  ||    
T  38577681 gggagttttattttgtggagtgttctttggggatgagtagtgacgatggatgattgtggatactgtgtttacagtgttttgtttatatttaggtgtccgt 38577582  T
Q  118 tttaggtggtgatgtgttttggtgggt 144  Q
     ||||||||||||||||||||||||||    
T  38577581 cttaggtggtgatgtgttttggtgggt 38577555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 27889105 - 27889158
Alignment:
Q  90 ttacagtgcttgattttttggagtttgttttaggtggtgatgtgttttggtgggt 144  Q
    |||||||||||| ||||||  ||| ||||||||||||||||||||||||||||||    
T  27889105 ttacagtgcttggttttttt-agtctgttttaggtggtgatgtgttttggtgggt 27889158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 90 - 144
Target Start/End: Original strand, 27947763 - 27947816
Alignment:
Q  90 ttacagtgcttgattttttggagtttgttttaggtggtgatgtgttttggtgggt 144  Q
    |||||||||||| ||||||  ||| ||||||||||||||||||||||||||||||    
T  27947763 ttacagtgcttggttttttt-agtctgttttaggtggtgatgtgttttggtgggt 27947816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 94
Target Start/End: Complemental strand, 35816121 - 35816066
Alignment:
Q  39 gggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttaca 94  Q
    |||||||||||| ||||||||||||| |||||  ||| |||||||| |||||||||    
T  35816121 gggtgttctttgggggtgagtagtgatgatgggtggttgtggatactgtgtttaca 35816066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 1e-58; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 44353468 - 44353333
Alignment:
Q  10 ggtgttggggtctgggagttttatctt-gagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgatttttt 108  Q
    |||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44353468 ggtgttggggtctgggagttttatttttgagggtgttctttgtaggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgatttttt 44353369  T
Q  109 ggagtttgttttaggtggtgatgtgttttggtgggt 144  Q
    ||||| ||||||||||||||||||||||||||||||    
T  44353368 ggagtctgttttaggtggtgatgtgttttggtgggt 44353333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 31972038 - 31971904
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttg 109  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||||||    
T  31972038 ggtgttggggtctgggagttttatttggagggtgttctttgtgggtgagtagtgacgatgggcggtggttgataccgtgtttacagtgcttgtttttttg 31971939  T
Q  110 gagtttgttttaggtggtgatgtgttttggtgggt 144  Q
    |||||||||||||||||| ||||||||||||||||    
T  31971938 gagtttgttttaggtggttatgtgttttggtgggt 31971904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 47325789 - 47325653
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttg--attttt 107  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || || ||||||| ||||||||||||||||   |||||    
T  47325789 ggtgttggggtctgggagttttattttgagggtgttctttgtgggtgagtagtgacgatgggcgatgatggatactgtgtttacagtgcttgtttttttt 47325690  T
Q  108 tggagtttgttttaggtggtgatgtgttttggtgggt 144  Q
    || ||||||||||||||||||||||||||||||||||    
T  47325689 tgaagtttgttttaggtggtgatgtgttttggtgggt 47325653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 38306438 - 38306568
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttg 109  Q
    |||||||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||  ||||||||||| ||||| | |||| |||| ||||| |    
T  38306438 ggtgttggggtctgtgagttttattttgagggtgttctttgtaggtgagtagtgacgatgggtggtggtggatatcgtgtctgcagttcttgttttttgg 38306537  T
Q  110 gagtttgttttaggtggtgatgtgttttggt 140  Q
    |||||||||||||||||||||||||||||||    
T  38306538 gagtttgttttaggtggtgatgtgttttggt 38306568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 10 - 141
Target Start/End: Complemental strand, 3419559 - 3419428
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttg 109  Q
    ||||||||||| |||||||||||| || ||||||||||||||| |||||||||||||||| ||||||||||||| | |||||||| || ||| |||||||    
T  3419559 ggtgttggggtttgggagttttattttaagggtgttctttgtgagtgagtagtgacgatgaacggtggtggatatcatgtttacaatgnttgtttttttg 3419460  T
Q  110 gagtttgttttaggtggtgatgtgttttggtg 141  Q
    || | |||||||||||||| ||||||||||||    
T  3419459 gattctgttttaggtggtgttgtgttttggtg 3419428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 10 - 142
Target Start/End: Original strand, 10244359 - 10244490
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttg 109  Q
    |||||| |||||||||| |||||  | ||||||| |||||||||||||||||||||||||| || ||||||||||| ||||||| |||||| ||||||||    
T  10244359 ggtgtttgggtctgggatttttagttggagggtggtctttgtgggtgagtagtgacgatgggcgatggtggataccatgtttacggtgctt-attttttg 10244457  T
Q  110 gagtttgttttaggtggtgatgtgttttggtgg 142  Q
    |||||||||||||||||||||||||||| ||||    
T  10244458 gagtttgttttaggtggtgatgtgttttcgtgg 10244490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 10 - 141
Target Start/End: Complemental strand, 3419300 - 3419169
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttg 109  Q
    ||||||||||| |||||||||||| || |||||||| |||||| ||||||||||| |||| ||||||||||||| | |||||||| |||||| |||||||    
T  3419300 ggtgttggggtttgggagttttattttaagggtgttttttgtgagtgagtagtgatgatgaacggtggtggatatcatgtttacaatgcttgtttttttg 3419201  T
Q  110 gagtttgttttaggtggtgatgtgttttggtg 141  Q
    || | |||||||||||||| ||||||||||||    
T  3419200 gattctgttttaggtggtgttgtgttttggtg 3419169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 26 - 144
Target Start/End: Complemental strand, 40726392 - 40726274
Alignment:
Q  26 agttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgatt-ttttggagtttgttttaggt 124  Q
    |||||||| ||||||||||||||||||| |||||||||| ||| | |||||||||||||||||||||| |||||||||| ||||||||| ||||||||||    
T  40726392 agttttattttgagggtgttctttgtgg-tgagtagtgatgataggcggtggtggataccgtgtttaccgtgcttgatttttttggagtctgttttaggt 40726294  T
Q  125 ggtgatgtgttttggtgggt 144  Q
    ||| ||||||||||||||||    
T  40726293 ggtaatgtgttttggtgggt 40726274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 10 - 141
Target Start/End: Original strand, 3867293 - 3867424
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttg 109  Q
    |||||||| || ||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||  ||  | |   |    
T  3867293 ggtgttggagtatggaagttttattttgagggtgttctttgggggtgagtagtgacgatggacggtggtggatatcgtgtttacagttgtttttgtgaag 3867392  T
Q  110 gagtttgttttaggtggtgatgtgttttggtg 141  Q
    ||||||||||| ||||||||||||||||||||    
T  3867393 gagtttgttttgggtggtgatgtgttttggtg 3867424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 25160992 - 25161121
Alignment:
Q  12 tgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttgga 111  Q
    |||||||||||| ||||||| |  | | ||||||||||||||||||||||||||||||| || ||||||||||  |||||||| |||||| ||||||| |    
T  25160992 tgttggggtctgagagtttttt--taaaggtgttctttgtgggtgagtagtgacgatgggcgttggtggatactatgtttacattgcttg-ttttttgaa 25161088  T
Q  112 gtttgttttaggtggtgatgtgttttggtgggt 144  Q
    || ||||||||||||||||||||||||||||||    
T  25161089 gtctgttttaggtggtgatgtgttttggtgggt 25161121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 10 - 143
Target Start/End: Complemental strand, 5860192 - 5860053
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttg------at 103  Q
    |||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||| |  ||||| |||||||||| | ||||||||       |    
T  5860192 ggtgttggggtctgggagttttattttcagggtgttctttgtggatgagtagtgacgatgggcaatggtgaataccgtgttaatagtgcttgtttttttt 5860093  T
Q  104 tttttggagtttgttttaggtggtgatgtgttttggtggg 143  Q
    |||||  ||| |||||||||||||||||||||||||||||    
T  5860092 tttttttagtctgttttaggtggtgatgtgttttggtggg 5860053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 37795166 - 37795308
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgc--------ttg 101  Q
    ||||||||||| || ||||||||| ||||||||||||||||||| | |||||| | ||||| |||||||||||||||||||||||||||        ||     
T  37795166 ggtgttggggtttgagagttttattttgagggtgttctttgtggttaagtagtaatgatgggcggtggtggataccgtgtttacagtgcttttttttttt 37795265  T
Q  102 attttttggagtttgttttaggtggtgatgtgttttggtgggt 144  Q
     ||||||||||| |||||||||||||||| |||||| ||||||    
T  37795266 tttttttggagtctgttttaggtggtgatatgtttttgtgggt 37795308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 10 - 142
Target Start/End: Complemental strand, 41089652 - 41089514
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttg-------a 102  Q
    |||||| ||||||||||||||||| |||||||||||||||| |||| | ||||||| |||| ||||||| ||||| |||||||||   ||||            
T  41089652 ggtgttagggtctgggagttttattttgagggtgttctttgcgggt-aatagtgacaatgggcggtggtagatactgtgtttacatgacttgtttttttt 41089554  T
Q  103 ttttttggagtttgttttaggtggtgatgtgttttggtgg 142  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  41089553 ttttttggagtctgttttaggtgatgatgtgttttggtgg 41089514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 34390138 - 34390199
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgaggg-tgttctttgtgggtgagtagtgacgatgg 70  Q
    |||||||  ||||||||||||||| ||||||| ||||||||| || ||||||||||||||||    
T  34390138 ggtgttgtagtctgggagttttattttgaggggtgttctttggggatgagtagtgacgatgg 34390199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 97
Target Start/End: Original strand, 3478523 - 3478613
Alignment:
Q  7 tttggtgttggggtctgggagttttatcttgagg-gtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtg 97  Q
    |||||||||| || |||||||||| || |||||| |||||||||| |||||||||||||||| ||  |||| |||||| ||  |||||||||    
T  3478523 tttggtgttgaggactgggagtttaattttgaggagtgttctttg-gggtgagtagtgacgacggttggtgatggatatcgcttttacagtg 3478613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 144
Target Start/End: Complemental strand, 35745710 - 35745589
Alignment:
Q  27 gttttatcttgag-ggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgatt---ttttggagtttgttttag 122  Q
    ||||||| ||||| ||||||||||| |||||||||||||||||||  || |||||||   |||||||  ||| ||| ||   ||  || || ||| ||||    
T  35745710 gttttattttgagaggtgttctttgggggtgagtagtgacgatgggtgggggtggatgttgtgtttagtgtgtttgtttctgttaaggtgtctgtcttag 35745611  T
Q  123 gtggtgatgtgttttggtgggt 144  Q
    ||||||||||||||||||||||    
T  35745610 gtggtgatgtgttttggtgggt 35745589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 33435288 - 33435337
Alignment:
Q  12 tgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtag 61  Q
    ||||| |||||| ||||||| | |||||||||||||||| ||||||||||    
T  33435288 tgttgaggtctgagagttttcttttgagggtgttctttgggggtgagtag 33435337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 144
Target Start/End: Original strand, 37795595 - 37795636
Alignment:
Q  103 ttttttggagtttgttttaggtggtgatgtgttttggtgggt 144  Q
    ||||||||||| |||||||||||||||| |||||| ||||||    
T  37795595 ttttttggagtctgttttaggtggtgatatgtttttgtgggt 37795636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 6585058 - 6585146
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgaggg-tgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtg 97  Q
    |||||||  ||||||||||||||| ||||||| || | ||||  |||||||||||||||||   ||| |||||||| |||||| |||||    
T  6585058 ggtgttgaagtctgggagttttattttgaggggtgctatttggaggtgagtagtgacgatgagtggttgtggatactgtgttttcagtg 6585146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 103; Significance: 6e-51; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 46692723 - 46692589
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttg 109  Q
    ||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||| |||||||    
T  46692723 ggtgttggggtctggaagttttatttggagggtgttctttgtgggtgagtagtgacgatgggcggtggttgatatcgtgtttacagtgcttgtttttttg 46692624  T
Q  110 gagtttgttttaggtggtgatgtgttttggtgggt 144  Q
    |||||||||||||||||||||||||||||| ||||    
T  46692623 gagtttgttttaggtggtgatgtgttttggagggt 46692589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 10 - 141
Target Start/End: Original strand, 5459338 - 5459469
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttg 109  Q
    ||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||||    
T  5459338 ggtgttggggtctggaagttttattttgatggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgattgtttttttg 5459437  T
Q  110 gagtttgttttaggtggtgatgtgttttggtg 141  Q
    |||||||||||| || ||||||||||||||||    
T  5459438 gagtttgttttaagtagtgatgtgttttggtg 5459469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 10 - 140
Target Start/End: Complemental strand, 5389325 - 5389196
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttg 109  Q
    |||||||||||||||||||||||| |||||||||||||| ||  ||||||||||||||||| |||||||||||||||||||||| ||||||| ||||| |    
T  5389325 ggtgttggggtctgggagttttattttgagggtgttctt-gtaagtgagtagtgacgatgggcggtggtggataccgtgtttacggtgcttgttttttgg 5389227  T
Q  110 gagtttgttttaggtggtgatgtgttttggt 140  Q
    |||||||||||||||||||||||||||||||    
T  5389226 gagtttgttttaggtggtgatgtgttttggt 5389196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 10 - 141
Target Start/End: Complemental strand, 24449834 - 24449702
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttg-atttttt 108  Q
    ||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||    
T  24449834 ggtgttggggtctaggagttttattttgagggtgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgcttgtttttttt 24449735  T
Q  109 ggagtttgttttaggtggtgatgtgttttggtg 141  Q
    ||||| |  ||||||||||||||||||||||||    
T  24449734 ggagtctactttaggtggtgatgtgttttggtg 24449702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 41920634 - 41920765
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttg-atttttt 108  Q
    ||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||| | |||||||| |||||||||||||| ||||||  ||||||    
T  41920634 ggtgttggggtcttggagttttattttgagggtgttttttgtgggtgagtagtgacgataggcggtggtgaataccgtgtttacattgcttgtttttttt 41920733  T
Q  109 ggagtttgttttaggtggtgatgtgttttggt 140  Q
     ||||||||||||||||||| ||| |||||||    
T  41920734 tgagtttgttttaggtggtggtgtattttggt 41920765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 41 - 144
Target Start/End: Complemental strand, 30685797 - 30685693
Alignment:
Q  41 gtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgatttt-ttggagtttgttttaggtggtgatgtgttttgg 139  Q
    |||||||||||||||| ||||||| ||||| ||||||||||||||||||||||| |||||| |||| ||||||| |||||||||||||||||||||||||    
T  30685797 gtgttctttgtgggtgtgtagtgaagatgggcggtggtggataccgtgtttacattgcttgtttttgttggagtctgttttaggtggtgatgtgttttgg 30685698  T
Q  140 tgggt 144  Q
    |||||    
T  30685697 tgggt 30685693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 55 - 144
Target Start/End: Complemental strand, 24684350 - 24684261
Alignment:
Q  55 tgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttggagtttgttttaggtggtgatgtgttttggtgggt 144  Q
    |||||||||||||||| |||||||||||| ||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||    
T  24684350 tgagtagtgacgatgggcggtggtggatatcgtgtttacagagtttgtttttttggagtttgttttaggtggtgatgtgttttggtgggt 24684261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 38 - 143
Target Start/End: Original strand, 6804745 - 6804848
Alignment:
Q  38 agggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttggagtttgttttaggtggtgatgtgtttt 137  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||| || ||||||||||||| |||||| |||  | |  ||||||||||||||||||    
T  6804745 agggtgttctttgtgggtgaggagtgacgatgggcggtggtggatactgtatttacagtgcttgtttttttagag--tctaataggtggtgatgtgtttt 6804842  T
Q  138 ggtggg 143  Q
    ||||||    
T  6804843 ggtggg 6804848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 57 - 144
Target Start/End: Complemental strand, 31584894 - 31584808
Alignment:
Q  57 agtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttggagtttgttttaggtggtgatgtgttttggtgggt 144  Q
    |||||||||||||  |||||||||||||||||||||||||| ||| ||||||||||  |||||||||||||||  |||||||||||||    
T  31584894 agtagtgacgatgagcggtggtggataccgtgtttacagtgattgtttttttggag-gtgttttaggtggtgacatgttttggtgggt 31584808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 71
Target Start/End: Complemental strand, 6764280 - 6764224
Alignment:
Q  15 tggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatgga 71  Q
    ||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||    
T  6764280 tggggtctgggagttttattttcaggatgttctttgtgggtgagtagtgacgatgga 6764224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 31585657 - 31585608
Alignment:
Q  16 ggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgac 65  Q
    |||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  31585657 ggggtctgagagttttattttgagggtgttctttgtgggtgagtagtgac 31585608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 22 - 140
Target Start/End: Complemental strand, 46814360 - 46814238
Alignment:
Q  22 tgggagttttatcttgaggg-tgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgatt---ttttggagtttgt 117  Q
    |||||||||||| | ||||| |||| ||||  ||||||||||||||||||||||| |||||||| |||||||||| | ||| ||   ||  || || |||    
T  46814360 tgggagttttatttcgaggggtgttatttggaggtgagtagtgacgatggacggttgtggatactgtgtttacagggtttgtttctgttaaggtgtctgt 46814261  T
Q  118 tttaggtggtgatgtgttttggt 140  Q
     ||||||||||||||||||||||    
T  46814260 cttaggtggtgatgtgttttggt 46814238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 7857829 - 7857915
Alignment:
Q  10 ggtgttggggtctgggagttttatcttga-gggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtg 97  Q
    |||||||  ||||||||||||||| |||| ||||||||| || |||||||||||| ||||||  ||| ||||  |||||||||||||||    
T  7857829 ggtgttgaagtctgggagttttattttgaggggtgttctatgggggtgagtagtggcgatgggtggttgtgg--accgtgtttacagtg 7857915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 24659113 - 24659165
Alignment:
Q  19 gtctgggagttttatcttgaggg-tgttctttgtgggtgagtagtgacgatgg 70  Q
    ||||||||||||||| ||||||| |||| |||| |||||||||||||||||||    
T  24659113 gtctgggagttttattttgaggggtgttatttgggggtgagtagtgacgatgg 24659165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 32882585 - 32882632
Alignment:
Q  52 gggtgagtagtgacgatggacggtggtggataccgtgtttacagtgct 99  Q
    |||||||||||||||||||  |||| |||||| |||||||||||||||    
T  32882585 gggtgagtagtgacgatgggtggtgttggatatcgtgtttacagtgct 32882632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 27031736 - 27031660
Alignment:
Q  19 gtctgggagttttatcttgaggg-tgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacag 95  Q
    ||||||||||||||| ||||||| |||||| || ||||||||||||||||| | | ||  ||||||| ||||||||||    
T  27031736 gtctgggagttttattttgaggggtgttctctg-gggtgagtagtgacgataggccgttatggatactgtgtttacag 27031660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 4e-49; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 47235875 - 47236010
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttg-atttttt 108  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||    
T  47235875 ggtgttggggtctgcgagttttattttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgtttttttt 47235974  T
Q  109 ggagtttgttttaggtggtgatgtgttttggtgggt 144  Q
      ||| |||||||||||||||||| |||||||||||    
T  47235975 taagtctgttttaggtggtgatgtattttggtgggt 47236010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 10 - 143
Target Start/End: Original strand, 53248077 - 53248211
Alignment:
Q  10 ggtgttggggtctgggagtttt-atcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgatttttt 108  Q
    |||||||||||||| ||||||| || ||||| |||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||    
T  53248077 ggtgttggggtctgagagtttttattttgagagtgttctttgtgggtgagtagtgacgatgggcggtggtggttaccgtgtttacagtgcttgttttttt 53248176  T
Q  109 ggagtttgttttaggtggtgatgtgttttggtggg 143  Q
    ||||| ||||||||||||||||||||||| |||||    
T  53248177 ggagtctgttttaggtggtgatgtgtttttgtggg 53248211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 10 - 141
Target Start/End: Complemental strand, 34475658 - 34475530
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttg 109  Q
    ||||||||||| || ||||||| |  | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||    
T  34475658 ggtgttggggtatgagagtttttt--taagggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacattgcttg-ttttttg 34475562  T
Q  110 gagtttgttttaggtggtgatgtgttttggtg 141  Q
    |||| |||||||||||||||||||||||||||    
T  34475561 gagtctgttttaggtggtgatgtgttttggtg 34475530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 45164032 - 45164166
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttg 109  Q
    ||||||||||||| |||||||||| ||||||||||| ||||| ||||| |||||||||||| ||||| || |||||||||||||| |||||| || ||||    
T  45164032 ggtgttggggtctaggagttttattttgagggtgttatttgtaggtgattagtgacgatgggcggtgatgaataccgtgtttacaatgcttgtttctttg 45164131  T
Q  110 gagtttgttttaggtggtgatgtgttttggtgggt 144  Q
    |||| | ||||||||||||||||||||||||||||    
T  45164132 gagtctattttaggtggtgatgtgttttggtgggt 45164166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 19176681 - 19176818
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttg---atttt 106  Q
    ||||| |||||||||| ||||||| |||||||||||||||  |||||||||||||||||||| |||||||||||| |||||||| |||||||    ||||    
T  19176681 ggtgtcggggtctgggtgttttattttgagggtgttctttaggggtgagtagtgacgatggatggtggtggatactgtgtttactgtgcttgtttttttt 19176780  T
Q  107 ttggagtttgttttaggtggtgatgtgttttggtgggt 144  Q
    ||||||| ||||||||||||| ||||||||||||||||    
T  19176781 ttggagtctgttttaggtggttatgtgttttggtgggt 19176818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 10 - 141
Target Start/End: Original strand, 31483061 - 31483189
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttg 109  Q
    ||||||||||| || ||||||| | || |||||||||||||||||| ||||||||||||| || |||||||||||| |||||||| |||||  |||||||    
T  31483061 ggtgttggggtttgagagtttttt-ttaagggtgttctttgtgggttagtagtgacgatgaacagtggtggataccatgtttacattgctt--ttttttg 31483157  T
Q  110 gagtttgttttaggtggtgatgtgttttggtg 141  Q
    |||||||||||||| |||||||||||||||||    
T  31483158 gagtttgttttaggcggtgatgtgttttggtg 31483189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 43012552 - 43012689
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgatttttt- 108  Q
    ||||||||||||| |||||||||  ||||||||||||||||  ||||||||||| |||||||||| ||||||||||||||||||| |||||| |||| |     
T  43012552 ggtgttggggtctaggagttttaatttgagggtgttctttggaggtgagtagtggcgatggacgggggtggataccgtgtttacaatgcttgtttttgtg 43012651  T
Q  109 --ggagtttgttttaggtggtgatgtgttttggtgggt 144  Q
      ||||| |||||||| ||||||||| |||||||||||    
T  43012652 aaggagtctgttttagatggtgatgtcttttggtgggt 43012689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 2392410 - 2392272
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgc----ttgattt 105  Q
    ||||||||||||| |||||||||| |||  |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||    ||  |||    
T  2392410 ggtgttggggtctaggagttttattttgtaggtgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgcttttttttttt 2392311  T
Q  106 tttggagtttgttttaggtggtgatgtgttttggtgggt 144  Q
    |||  ||| | ||||||| ||||||||||||||||||||    
T  2392310 tttttagtctattttaggcggtgatgtgttttggtgggt 2392272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 2394174 - 2394035
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgc-----ttgatt 104  Q
    ||||||||||||| |||||||||| |||  |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||     ||  ||    
T  2394174 ggtgttggggtctaggagttttattttgtaggtgttatttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacagtgcttttttttttt 2394075  T
Q  105 ttttggagtttgttttaggtggtgatgtgttttggtgggt 144  Q
    ||||  ||| | ||||||| ||||||||||||||||||||    
T  2394074 ttttttagtctattttaggcggtgatgtgttttggtgggt 2394035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 17551129 - 17551269
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttg------at 103  Q
    |||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||| |||| |||||  | ||||||       |    
T  17551129 ggtgttggggtctgagagttttattttgagggtgttctttgtcggtgagtagtgacgatgggcggtggtggttaccttgtttgtaatgcttgtttttttt 17551228  T
Q  104 tttttggagtttgttttaggtggtgatgtgttttggtgggt 144  Q
    |||||  ||| | ||||||||||||||||||||||||||||    
T  17551229 tttttttagtctcttttaggtggtgatgtgttttggtgggt 17551269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 20611966 - 20612050
Alignment:
Q  17 gggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttg 101  Q
    |||||| ||||||||||  ||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||    
T  20611966 gggtctaggagttttattctgagggtgttctttgtgggtgagtagtgacgatgggcgatggtggatactgtgtttacagtgcttg 20612050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 9583954 - 9583822
Alignment:
Q  14 ttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgatttttt---gg 110  Q
    |||||||||||||||||||| |||||| ||||||||| || |||||||||||||| | |||||||||||| ||||||||| ||||||| ||||||   ||    
T  9583954 ttggggtctgggagttttattttgaggatgttctttgcgg-tgagtagtgacgataggcggtggtggatatcgtgtttacggtgcttgtttttttgaagg 9583856  T
Q  111 agtttgttttaggtggtgatgtgttttggtgggt 144  Q
    ||| |  |||  ||||||||||||||||||||||    
T  9583855 agtctaatttttgtggtgatgtgttttggtgggt 9583822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 30352343 - 30352247
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgatttttt 108  Q
    ||||||||||||| |||||||| | |  |||||||||||||||| ||||||||||||||||  |||||||||||||||||||||||| |||| ||||||    
T  30352343 ggtgttggggtctcggagtttttttt--agggtgttctttgtggatgagtagtgacgatgggtggtggtggataccgtgtttacagtacttgttttttt 30352247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 40023477 - 40023389
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggt-gttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtg 97  Q
    |||||||  ||||||||||||||| |||||||  |||||||  || ||||||||||||||||| ||| |||||||||||||||||||||    
T  40023477 ggtgttgtagtctgggagttttattttgaggggcgttcttttgggatgagtagtgacgatggatggttgtggataccgtgtttacagtg 40023389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 10 - 97
Target Start/End: Complemental strand, 23328255 - 23328167
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgag-ggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtg 97  Q
    |||||||  ||||||||||||||| ||||| ||||||||||| |||||||||||||||||||  ||| |||||||  ||| ||||||||    
T  23328255 ggtgttgaagtctgggagttttattttgagtggtgttctttgggggtgagtagtgacgatgggtggttgtggatattgtgcttacagtg 23328167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 144
Target Start/End: Original strand, 7105014 - 7105155
Alignment:
Q  7 tttggtgttggggtctgggagttttatcttgaggg-tgtt-ctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgatt 104  Q
    |||| |||| ||| ||||||||||||| || |||| |||| ||||| |||||||||||||||||||  |||||||||||| || |||| |||||||| ||    
T  7105014 tttgatgttagggactgggagttttattttaaggggtgtttctttg-gggtgagtagtgacgatgggtggtggtggatactgtttttatagtgcttgttt 7105112  T
Q  105 tttt---ggagtttgttttaggtggtgatgtgttttggtgggt 144  Q
    | ||   | ||| |||||||||||||||  |||||||| ||||    
T  7105113 tcttgaagaagtctgttttaggtggtgacatgttttggcgggt 7105155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 45399002 - 45399060
Alignment:
Q  39 gggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtg 97  Q
    |||||||| ||| |||||||||||||||||||| | | |||||||  ||||||||||||    
T  45399002 gggtgttcgttgggggtgagtagtgacgatggatgattgtggatattgtgtttacagtg 45399060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 95; Significance: 3e-46; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 10524277 - 10524410
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttg 109  Q
    ||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||    
T  10524277 ggtgttggggtttgggagttttatttggagggtgttctttgtgggtgagtagtgacgatgggcggtggtggataccgtgtttacggtgcttg-ttttttg 10524375  T
Q  110 gagtttgttttaggtggtgatgtgttttggtgggt 144  Q
    |||||||||||||  ||||| ||||||||||||||    
T  10524376 gagtttgttttagacggtgacgtgttttggtgggt 10524410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 387351 - 387488
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgatttttt- 108  Q
    |||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||| |||||||| ||   ||||||||| |||||| |||| |     
T  387351 ggtgttggggtctgggagttttattttgagggtgttctttgggggtgaatagtgacgatgggcggtggtgaattttgtgtttacaatgcttgtttttgtg 387450  T
Q  109 --ggagtttgttttaggtggtgatgtgttttggtgggt 144  Q
      ||||| ||||||||||||||||||||||||||||||    
T  387451 aaggagtctgttttaggtggtgatgtgttttggtgggt 387488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 39338769 - 39338630
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttg-----att 104  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||||||||| | |||||||||||||||      ||    
T  39338769 ggtgttgaggtctgggagttttattttgagggtgttctttgtgggtgagtagtgacgatgggcgatggtggata-cttgtttacagtgcttgtttttttt 39338671  T
Q  105 ttttggagtttgttttaggt-ggtgatgtgttttggtgggt 144  Q
    |||| |||| |||||||||| ||||||||||||||||||||    
T  39338670 tttttgagtctgttttaggtgggtgatgtgttttggtgggt 39338630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 17116784 - 17116655
Alignment:
Q  10 ggtgttggggtctgggagtttt-atcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgc--ttgatttt 106  Q
    |||||||||||||| ||||||| || |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||  ||  ||||    
T  17116784 ggtgttggggtctgagagtttttattttgagggtgttctttgtgggtgagtaatgacgatgggcggtggtggataccgtgtttacagtgctttttttttt 17116685  T
Q  107 ttggagtttgttttaggtggtgatgtgttt 136  Q
    ||  ||| ||||||||| ||||||||||||    
T  17116684 ttttagtctgttttaggcggtgatgtgttt 17116655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 7874467 - 7874554
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgaggg-tgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtg 97  Q
    |||||||  |||| |||||||||| ||||||| ||||||||| |||||||||||||||||||  ||| |||||||| ||||||||||||    
T  7874467 ggtgttgaagtcttggagttttattttgagggatgttctttg-gggtgagtagtgacgatgggtggttgtggatactgtgtttacagtg 7874554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 10 - 94
Target Start/End: Complemental strand, 14106427 - 14106342
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgaggg-tgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttaca 94  Q
    |||||||  ||||| ||||||||| ||||||| ||||||||| ||||||||||||||||||   ||| |||||||| |||||||||    
T  14106427 ggtgttgaagtctgagagttttattttgaggggtgttctttgggggtgagtagtgacgatgagtggttgtggatactgtgtttaca 14106342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 97
Target Start/End: Original strand, 7460852 - 7460940
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgaggg-tgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtg 97  Q
    |||||||  ||||||||||||||| ||||||| ||||||||| || |||||||||||||||   ||| |||||||  ||||||||||||    
T  7460852 ggtgttgaagtctgggagttttattttgaggggtgttctttggggttgagtagtgacgatgtgtggttgtggatattgtgtttacagtg 7460940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 39 - 144
Target Start/End: Original strand, 5254459 - 5254565
Alignment:
Q  39 gggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgatt---ttttggagtttgttttaggtggtgatgtgtt 135  Q
    ||||||||||||  ||||||||||||||||||  ||| |||||||| |||||||||||| ||| ||   ||  || ||  || |||||||||||||||||    
T  5254459 gggtgttctttg--ggtgagtagtgacgatgggtggttgtggatactgtgtttacagtgtttgtttctgttaaggtgtccgtcttaggtggtgatgtgtt 5254556  T
Q  136 ttggtgggt 144  Q
    |||||||||    
T  5254557 ttggtgggt 5254565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 25281178 - 25281116
Alignment:
Q  78 tggataccgtgtttacagtgcttgattttttggagtttgttttaggtggtgatgtgttttggt 140  Q
    |||||||  |||||||| |||||||||||||  ||| ||||||||||||||| ||||||||||    
T  25281178 tggatactatgtttacattgcttgatttttttaagtctgttttaggtggtgacgtgttttggt 25281116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 16952292 - 16952229
Alignment:
Q  7 tttggtgttggggtctgggagttttatcttgaggg-tgttctttgtgggtgagtagtgacgatg 69  Q
    |||||||||| || |||||||||| || | ||||| ||||||||| ||||||||||||||||||    
T  16952292 tttggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatg 16952229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 17022957 - 17022894
Alignment:
Q  7 tttggtgttggggtctgggagttttatcttgaggg-tgttctttgtgggtgagtagtgacgatg 69  Q
    |||||||||| || |||||||||| || | ||||| ||||||||| ||||||||||||||||||    
T  17022957 tttggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatg 17022894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 17060263 - 17060200
Alignment:
Q  7 tttggtgttggggtctgggagttttatcttgaggg-tgttctttgtgggtgagtagtgacgatg 69  Q
    |||||||||| || |||||||||| || | ||||| ||||||||| ||||||||||||||||||    
T  17060263 tttggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatg 17060200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 179 - 239
Target Start/End: Complemental strand, 15533626 - 15533566
Alignment:
Q  179 ttatgagagaagtttcacaagaaatgcaagaatcctgtacggcagcatgtaacacttacaa 239  Q
    ||||||||||||||| ||||||||  |||||||| | |  ||||||||| |||||||||||    
T  15533626 ttatgagagaagtttgacaagaaacacaagaatcttatgtggcagcatgcaacacttacaa 15533566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 10 - 144
Target Start/End: Complemental strand, 30167468 - 30167334
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttga-tttttt 108  Q
    ||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||||||||||||| ||||||    
T  30167468 ggtgttggggtatgggagttttattttgagggtgttctttgtgggtgagtggtgacgttgg-cggtggtggataccgtgtttacagtgcttgattttttt 30167370  T
Q  109 ggagtttgttttaggtggtgatgtgttttggtgggt 144  Q
    ||||| |||||||||  |||||||||||||||||||    
T  30167369 ggagtctgttttaggatgtgatgtgttttggtgggt 30167334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 8255204 - 8255332
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattt-ttt 108  Q
    |||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||   ||||||||||| |||||||||||||||| ||| |||    
T  8255204 ggtgttagggtctgtgagttttattttgagggtgttctttgtgggtgagtagtgacgatgggatgtggtggatactgtgtttacagtgcttgttttattt 8255303  T
Q  109 ggagtttgttttaggtggtgatgtgtttt 137  Q
    ||||| |||||||||||||||||||||||    
T  8255304 ggagtctgttttaggtggtgatgtgtttt 8255332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 8268622 - 8268750
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattt-ttt 108  Q
    |||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||   ||||||||||| |||||||||||||||| ||| |||    
T  8268622 ggtgttagggtctgtgagttttattttgagggtgttctttgtgggtgagtagtgacgatgggatgtggtggatactgtgtttacagtgcttgttttattt 8268721  T
Q  109 ggagtttgttttaggtggtgatgtgtttt 137  Q
    ||||| |||||||||||||||||||||||    
T  8268722 ggagtctgttttaggtggtgatgtgtttt 8268750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 21 - 144
Target Start/End: Original strand, 30964625 - 30964749
Alignment:
Q  21 ctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttga-ttttttggagtttgttt 119  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||| ||| ||| |||||||||| ||| ||||||||||| |||||    
T  30964625 ctgggagttttattttgagggtgttctttgtgggtgagtagtgatgatgggcggtggtgaatatcgtatttacagtgcgtgatttttttggagtctgttt 30964724  T
Q  120 taggtggtgatgtgttttggtgggt 144  Q
    |||||||||||||||||||||||||    
T  30964725 taggtggtgatgtgttttggtgggt 30964749  T

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Target: chr4; HSP #5
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 29 - 144
Target Start/End: Original strand, 20464786 - 20464901
Alignment:
Q  29 tttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttggagtttgttttaggtggtg 128  Q
    ||||| ||||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||| | ||| ||||||| ||||||||||||||||||    
T  20464786 tttattttgagggtgttatttgggggtgagtagtgacgatgggcggtggtggataccgtgtttacagggtttgtttttttgaagtttgttttaggtggtg 20464885  T
Q  129 atgtgttttggtgggt 144  Q
    |||| | |||||||||    
T  20464886 atgtatgttggtgggt 20464901  T

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Target: chr4; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 10 - 108
Target Start/End: Complemental strand, 8706048 - 8705950
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgatttttt 108  Q
    |||||||||||||  ||||||||| |||||||||||||||||||||| ||||||||||||| | ||||||||||| |||||||||||||||| ||||||    
T  8706048 ggtgttggggtctaagagttttattttgagggtgttctttgtgggtgggtagtgacgatgggcagtggtggatactgtgtttacagtgcttgttttttt 8705950  T

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Target: chr4; HSP #7
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 36689651 - 36689577
Alignment:
Q  67 atggacggtggtggataccgtgtttacagtgcttgattttttggagtttgttttaggtggtgatgtgttttggtg 141  Q
    |||||||||||| |||||||||||||||  ||||| ||||||||||| |||||||| ||||||||||||||||||    
T  36689651 atggacggtggttgataccgtgtttacaaggcttgtttttttggagtatgttttagatggtgatgtgttttggtg 36689577  T

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Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 104 - 144
Target Start/End: Complemental strand, 27555740 - 27555700
Alignment:
Q  104 tttttggagtttgttttaggtggtgatgtgttttggtgggt 144  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  27555740 tttttggagtttgttttaggtggtgatgtgttttggtgggt 27555700  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 35341249 - 35341148
Alignment:
Q  5 agtttggtgttggggtctgggagttttatcttgaggg-tgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgat 103  Q
    ||||||||||||  || |||||||||||| ||||||| |||||| || |||||||||||||||||||  ||| | |||||| |||||||||||| ||| |    
T  35341249 agtttggtgttgaagtttgggagttttattttgaggggtgttctctg-gggtgagtagtgacgatgggtggttgcggatactgtgtttacagtgtttgtt 35341151  T
Q  104 ttt 106  Q
    |||    
T  35341150 ttt 35341148  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 138
Target Start/End: Complemental strand, 31050566 - 31050434
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgaggg-tgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgatt---t 105  Q
    |||||||  ||||||  ||||||| ||||||| ||||| ||| |||||||||||||||||||| | ||||||||   |||||||||||| ||| ||   |    
T  31050566 ggtgttgaagtctggctgttttattttgaggggtgttccttgggggtgagtagtgacgatggatgatggtggatgttgtgtttacagtgtttgcttctgt 31050467  T
Q  106 tttggagtttgttttaggtggtgatgtgttttg 138  Q
    |  || ||| || ||||||||||||||||||||    
T  31050466 tgaggtgttcgtcttaggtggtgatgtgttttg 31050434  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 19673271 - 19673348
Alignment:
Q  7 tttggtgttggggtctgggagttttatcttgagg-gtgttctttgtgggtgagtagtgacgatggacggtggtggata 83  Q
    |||||||||| || ||| |||||| || |||||| |||||||||| |||||||||||||||| ||| |||| ||||||    
T  19673271 tttggtgttgaggactgagagtttaattttgaggagtgttctttgggggtgagtagtgacgacggatggtgttggata 19673348  T

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Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 10542009 - 10542127
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttg 109  Q
    ||||||||||||||| |||||||| | |||||| ||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||| |||||||    
T  10542009 ggtgttggggtctggaagttttatttggagggtattctttgtgggtgagtagtgacgatgggcggtggtggataccgtatttaaagtgcttgtttttttg 10542108  T
Q  110 gagtttgttttaggtggtg 128  Q
    |||||||||||||||||||    
T  10542109 gagtttgttttaggtggtg 10542127  T

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Target: chr6; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 14663256 - 14663392
Alignment:
Q  12 tgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgctt----gattttt 107  Q
    ||||||||| |||||||||||| |||||| ||||||||| ||||||||||||||||||| ||||||||||||  |||||||||||||||      |||||    
T  14663256 tgttggggtttgggagttttattttgaggatgttctttgcgggtgagtagtgacgatgggcggtggtggatattgtgtttacagtgctttttgttttttt 14663355  T
Q  108 tggagtttgttttaggtggtgatgtgttttggtgggt 144  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  14663356 tggagtctgttttaggtggtgatgtgttttcgtgggt 14663392  T

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Target: chr6; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 10 - 140
Target Start/End: Original strand, 3117670 - 3117802
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttg--attttt 107  Q
    |||||||||||||||||||||||| |  |||||||||||||||||| ||||| |||||||  ||||||||| ||||||||||||||||||||   |||||    
T  3117670 ggtgttggggtctgggagttttatttatagggtgttctttgtgggtaagtagagacgatgagcggtggtggttaccgtgtttacagtgcttgtttttttt 3117769  T
Q  108 tggagtttgttttaggtggtgatgtgttttggt 140  Q
    |  ||||||||||||||||||||||| ||||||    
T  3117770 tttagtttgttttaggtggtgatgtggtttggt 3117802  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 82 - 144
Target Start/End: Original strand, 3254207 - 3254269
Alignment:
Q  82 taccgtgtttacagtgcttgattttttggagtttgttttaggtggtgatgtgttttggtgggt 144  Q
    |||||||||||| ||||||| ||||||||||| |||||||||||||||||| |||||||||||    
T  3254207 taccgtgtttacggtgcttgtttttttggagtctgttttaggtggtgatgtattttggtgggt 3254269  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 144
Target Start/End: Original strand, 15944276 - 15944311
Alignment:
Q  109 ggagtttgttttaggtggtgatgtgttttggtgggt 144  Q
    ||||| ||||||||||||||||||||||||||||||    
T  15944276 ggagtctgttttaggtggtgatgtgttttggtgggt 15944311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 10 - 143
Target Start/End: Original strand, 5883 - 6015
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttg 109  Q
    ||||||||| |||||||||||||| ||||||||||| |||||||||||||||||| |||||  ||||||||||||| ||||||| ||||||| |||||||    
T  5883 ggtgttgggatctgggagttttattttgagggtgttttttgtgggtgagtagtgatgatgggaggtggtggataccatgtttacggtgcttgtttttttg 5982  T
Q  110 gagtttgttttaggtggtgatgtgttttggtggg 143  Q
     ||| | ||||||||||||||||||||| |||||    
T  5983 aagtct-ttttaggtggtgatgtgtttttgtggg 6015  T

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Target: scaffold0068 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 10 - 137
Target Start/End: Complemental strand, 35676 - 35553
Alignment:
Q  10 ggtgttggggtctgggagttttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacagtgcttgattttttg 109  Q
    ||||||||||| |||||||||| | | |||  ||||||| |  ||||||| |||||||||| | ||||||||||| |||||||||||||||| |||||||    
T  35676 ggtgttggggtgtgggagttttttttagag--tgttcttagcaggtgagt-gtgacgatgggcagtggtggatactgtgtttacagtgcttg-ttttttg 35581  T
Q  110 gagtttgttttaggtggtgatgtgtttt 137  Q
    |||| ||||||||||| |||||||||||    
T  35580 gagtctgttttaggtgatgatgtgtttt 35553  T

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Target: scaffold0434 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: scaffold0434
Description:

Target: scaffold0434; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 2497 - 2442
Alignment:
Q  89 tttacagtgcttgattttttggagtttgttttaggtggtgatgtgttttggtgggt 144  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  2497 tttacggtgcttgtttttttggagtttgttttaggtggtgatgtggtttggtgggt 2442  T

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Target: scaffold0172 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 29 - 144
Target Start/End: Original strand, 19113 - 19230
Alignment:
Q  29 tttatcttgagggtgttctttgtgggtgagtagtgacgatggacggtggtggataccgtgtttacag-----tgcttgattttttggagtttgttttagg 123  Q
    ||||| |||||||||||| |||||||||||||||   ||||  ||||||| ||||||||||||||||     |  ||  |||||| |||| |||||||||    
T  19113 tttattttgagggtgttcattgtgggtgagtagt---gatgagcggtggtagataccgtgtttacagtatttttttttttttttttgagtctgttttagg 19209  T
Q  124 tggtgatgtgttttggtgggt 144  Q
    ||||||||| |||||||||||    
T  19210 tggtgatgtattttggtgggt 19230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 48560 - 48643
Alignment:
Q  58 gtagtgacgatggacggtggtggataccgtgtttacagtgcttg-attttttggagtttgttttaggtggtgatgtgttttggt 140  Q
    ||||||||||||| |  ||||| |||||||||| ||||||||||  ||||||  ||| ||||||||||| ||||||||||||||    
T  48560 gtagtgacgatgggctatggtgaataccgtgttaacagtgcttgttttttttttagtctgttttaggtgatgatgtgttttggt 48643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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