View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8509_low_13 (Length: 443)
Name: NF8509_low_13
Description: NF8509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8509_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 420; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 15 - 434
Target Start/End: Original strand, 49460212 - 49460631
Alignment:
| Q |
15 |
aatatgtacacacaagttcatatttgtatattggtaatagggcctttaaaccaacgcctaccactaagtacccaataagaaagtacaataatgagcaaac |
114 |
Q |
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| T |
49460212 |
aatatgtacacacaagttcatatttgtatattggtaatagggcctttaaaccaacgcctaccactaagtacccaataagaaagtacaataatgagcaaac |
49460311 |
T |
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| Q |
115 |
atccaacagcaacaggtgtgtagttaagtgtctcaatggttattgggtaggaaacaggcaatgagaatagtatagagattgtggccacccaaataactgc |
214 |
Q |
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| T |
49460312 |
atccaacagcaacaggtgtgtagttaagtgtctcaatggttattgggtaggaaacaggcaatgagaatagtatagagattgtggccacccaaataactgc |
49460411 |
T |
|
| Q |
215 |
aatccaaccaacaacgaatccgtaacgacctaagttgaaaggcccagcaataaatcgctttcgcgccaaggtaactctgaagaagataggcagtgcataa |
314 |
Q |
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| T |
49460412 |
aatccaaccaacaacgaatccgtaacgacctaagttgaaaggcccagcaataaatcgctttcgcgccaaggtaactctgaagaagataggcagtgcataa |
49460511 |
T |
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| Q |
315 |
gcaatgtagaggcctatcactgctatggataccatggcttcaaatgccactatgcttccaagagactgcattcaataatagagtttgagttgagttagag |
414 |
Q |
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| T |
49460512 |
gcaatgtagaggcctatcactgctatggataccatggcttcaaatgccactatgcttccaagagactgcattcaataatagagtttgagttgagttagag |
49460611 |
T |
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| Q |
415 |
aatggcaccaatagaataat |
434 |
Q |
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| T |
49460612 |
aatggcaccaatagaataat |
49460631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 44 - 384
Target Start/End: Original strand, 49467608 - 49467948
Alignment:
| Q |
44 |
attggtaatagggcctttaaaccaacgcctaccactaagtacccaataagaaagtacaataatgagcaaacatccaacagcaacaggtgtgtagttaagt |
143 |
Q |
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| T |
49467608 |
attggttataggtcctttaaaccaatgcctaccactaagtatccagtaagaaagtataagaatgatcaagcatccaagtgcaacaggtgtgtagttaagt |
49467707 |
T |
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| Q |
144 |
gtctcaatggttattgggtaggaaacaggcaatgagaatagtatagagattgtggccacccaaataactgcaatccaaccaacaacgaatccgtaacgac |
243 |
Q |
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| T |
49467708 |
gtctcaatcgttattgggtaggaaacaggcaatgagaagaggatggatatgatcaccacccaaataactgcaacccacccaacaatgattccataacgac |
49467807 |
T |
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| Q |
244 |
ctaagttgaaaggcccagcaataaatcgctttcgcgccaaggtaactctgaagaagataggcagtgcataagcaatgtagaggcctatcactgctatgga |
343 |
Q |
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| T |
49467808 |
ccaagttgaaaggccctggaacaaaatactttcgtgccaaggtcaccctaaagaagatgggaagagcataagcaatgtataagtcaatcactgctatgga |
49467907 |
T |
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| Q |
344 |
taccatggcttcaaatgccactatgcttccaagagactgca |
384 |
Q |
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| T |
49467908 |
caccatggcttcaaatgccactatacttccaagagactgca |
49467948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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