View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8509_low_14 (Length: 442)

Name: NF8509_low_14
Description: NF8509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8509_low_14
NF8509_low_14
[»] chr7 (7 HSPs)
chr7 (18-423)||(21291964-21292364)
chr7 (329-414)||(21949745-21949830)
chr7 (329-414)||(46809037-46809122)
chr7 (311-414)||(6617028-6617130)
chr7 (329-414)||(34638490-34638575)
chr7 (329-414)||(42053624-42053709)
chr7 (331-414)||(20647502-20647584)
[»] chr4 (15 HSPs)
chr4 (61-428)||(29688941-29689308)
chr4 (102-423)||(37011115-37011435)
chr4 (61-277)||(29689323-29689539)
chr4 (311-407)||(23493371-23493466)
chr4 (311-414)||(34806285-34806387)
chr4 (311-414)||(36316192-36316294)
chr4 (311-414)||(36330401-36330503)
chr4 (328-414)||(53095190-53095276)
chr4 (311-412)||(27020242-27020342)
chr4 (329-414)||(39295917-39296002)
chr4 (329-414)||(5948185-5948270)
chr4 (279-333)||(34851624-34851678)
chr4 (329-393)||(32107426-32107490)
chr4 (339-427)||(33287452-33287540)
chr4 (359-427)||(34851554-34851621)
[»] chr6 (7 HSPs)
chr6 (61-429)||(11121112-11121468)
chr6 (353-414)||(1122221-1122282)
chr6 (338-413)||(22460488-22460563)
chr6 (329-414)||(18898895-18898980)
chr6 (329-414)||(15559665-15559752)
chr6 (279-330)||(24316543-24316594)
chr6 (359-427)||(720280-720347)
[»] chr8 (8 HSPs)
chr8 (61-333)||(3730158-3730429)
chr8 (273-428)||(18464653-18464808)
chr8 (329-414)||(39617897-39617982)
chr8 (329-429)||(31441784-31441884)
chr8 (329-414)||(12498711-12498796)
chr8 (329-414)||(18381355-18381440)
chr8 (331-413)||(22935467-22935548)
chr8 (329-403)||(6420917-6420991)
[»] chr2 (7 HSPs)
chr2 (130-270)||(12111633-12111773)
chr2 (320-414)||(19622575-19622668)
chr2 (329-414)||(4647942-4648027)
chr2 (317-414)||(7647550-7647645)
chr2 (359-414)||(17419096-17419151)
chr2 (372-414)||(30960864-30960906)
chr2 (329-414)||(40267811-40267896)
[»] chr5 (9 HSPs)
chr5 (311-414)||(16044424-16044526)
chr5 (329-414)||(5808337-5808422)
chr5 (329-414)||(1594551-1594636)
chr5 (311-414)||(16484944-16485046)
chr5 (311-414)||(39560889-39560991)
chr5 (311-414)||(40835039-40835141)
chr5 (317-414)||(640968-641063)
chr5 (329-414)||(39004880-39004965)
chr5 (329-414)||(16482495-16482580)
[»] chr3 (12 HSPs)
chr3 (329-414)||(3335960-3336045)
chr3 (311-414)||(22402404-22402506)
chr3 (311-414)||(33951663-33951765)
chr3 (332-414)||(47330045-47330127)
chr3 (338-414)||(4545694-4545770)
chr3 (311-414)||(37969174-37969276)
chr3 (346-414)||(25899153-25899221)
chr3 (311-414)||(4062369-4062471)
chr3 (328-408)||(23687689-23687768)
chr3 (328-408)||(24059926-24060005)
chr3 (359-429)||(46028310-46028379)
chr3 (279-332)||(1576078-1576131)
[»] chr1 (14 HSPs)
chr1 (329-414)||(28641570-28641655)
chr1 (311-414)||(2027824-2027926)
chr1 (311-414)||(49008169-49008271)
chr1 (359-429)||(32829231-32829300)
chr1 (329-414)||(2843954-2844039)
chr1 (329-414)||(18414533-18414618)
chr1 (329-414)||(32519749-32519834)
chr1 (330-414)||(45541463-45541547)
chr1 (273-348)||(36085857-36085932)
chr1 (359-429)||(5965116-5965185)
chr1 (359-429)||(15853338-15853407)
chr1 (329-414)||(8110690-8110775)
chr1 (311-414)||(24779858-24779960)
chr1 (279-333)||(32829166-32829220)
[»] scaffold0009 (1 HSPs)
scaffold0009 (329-414)||(194652-194737)
[»] scaffold0256 (1 HSPs)
scaffold0256 (311-403)||(4019-4110)
[»] scaffold0014 (1 HSPs)
scaffold0014 (311-415)||(20367-20470)


Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 18 - 423
Target Start/End: Original strand, 21291964 - 21292364
Alignment:
Q  18 gctatggttggtgctcgcgttttgggcaaaattaaaattgtatgggttggtgtgatttgaatcagttctgcactttcgggttccgagcatgtgggttata 117  Q
    ||||||||||||||||| |||||||||||||     |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  21291964 gctatggttggtgctcgtgttttgggcaaaa-----attgtacgggttggtgtgatttgaatcagttatgcactttcgggttccgagcatgtgggttatg 21292058  T
Q  118 tcggatggccgctccattggacggaggatccaaattgataggccaaaaatagccgtacaaacttgatgtcttgtgtcttagtgagtggttggtgggtgga 217  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||    
T  21292059 tcggatggccgctccatttgacggaggatccaaattgatgggccaaaaatagtcgtacaaacttgatgtcttctgtctcagtgagtggttggtgggtgga 21292158  T
Q  218 ttcgctaccgtgttcgtggtcggattcatttccattggtaaaaggttggagttcagacttatgcctaggttgtgcttgtataatcgcttgatgtgggcta 317  Q
     ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||    
T  21292159 ctcgctgccgtgttcgtggtcggattcatttccattggtaaaaggttggagttcagacttatgcctagtttgtgcttgtatgatcgcttgatgtgggcta 21292258  T
Q  318 gaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccacttgc 417  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |||| | ||||||||||||||||    
T  21292259 gaaatggctgattaatttgttgttgatcatcgcagtaaacggttggtgcgtgttaattcgttaattaccgtgttggcggtcaagtccactccccacttgc 21292358  T
Q  418 aagcat 423  Q
    ||||||    
T  21292359 aagcat 21292364  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 21949745 - 21949830
Alignment:
Q  329 ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||||| |||||||||| ||| ||||| ||| |||||||| ||||  |||||||||||||||||||| ||||| ||||||||||    
T  21949745 ttaatttgatgttgatcatagcagtaaacagttcgtgcgtgtggattttttaattaccgtgttggtggttgaatctactccccact 21949830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 329 - 414
Target Start/End: Complemental strand, 46809122 - 46809037
Alignment:
Q  329 ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||||| |||||||||| ||| ||||| ||| ||||||||  ||| ||||||||||||||||||||| ||||| ||||||||||    
T  46809122 ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggtggttgaatctactccccact 46809037  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 414
Target Start/End: Complemental strand, 6617130 - 6617028
Alignment:
Q  311 tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc 410  Q
    ||||| ||||||| ||| |||||||| |||||||||| ||| ||||| ||| ||| |||| |||| ||||||||||||||||| ||| ||||| |||||     
T  6617130 tgggccagaaatgactg-ttaatttgatgttgatcatagcagtaaactgttagtgtgtgtggatttgttaattaccgtgttggcggttgaatctactcca 6617032  T
Q  411 cact 414  Q
    ||||    
T  6617031 cact 6617028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 34638490 - 34638575
Alignment:
Q  329 ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||||| |||||||||| ||| ||||| ||| ||||||||  ||  ||||||||||||||||| ||| ||||| ||| ||||||    
T  34638490 ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatctgttaattaccgtgttggcggttgaatctacttcccact 34638575  T

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Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 414
Target Start/End: Complemental strand, 42053709 - 42053624
Alignment:
Q  329 ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||||| |||||||||| ||| ||||| ||| ||||||||  ||  ||||||||||||||||| ||| ||||| ||| ||||||    
T  42053709 ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatctgttaattaccgtgttggcggttgaatctacttcccact 42053624  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 331 - 414
Target Start/End: Complemental strand, 20647584 - 20647502
Alignment:
Q  331 aatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||||||||||| ||| ||| ||| ||||||||  ||| |||| ||||| ||||||||||| |||||||||| ||| |||||    
T  20647584 aatttgttgttgattatcacaacaaatggttggtga-tgtggatttgttaaataccgtgttggcggtcgaatccgctctccact 20647502  T

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Target: chr4 (Bit Score: 155; Significance: 4e-82; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 61 - 428
Target Start/End: Complemental strand, 29689308 - 29688941
Alignment:
Q  61 gggttggtgtgatttgaatcagttctgcac--tttcgggttccgagcatgtgggttatatcggatggccgctccattggacggaggatccaaattgatag 158  Q
    |||||||||||||| || |||  |||||||  |||| | |||||||  |||||||||| ||||||||| |||| ||| |||||||||| |||||||||||    
T  29689308 gggttggtgtgattcgactcaaatctgcacactttcagcttccgagtgtgtgggttatgtcggatggcggctctatttgacggaggattcaaattgatag 29689209  T
Q  159 gccaaaaatagccgtacaaacttgatgtcttgtgtcttagtgagtggttggtgggtggattcgctaccgtgttcgtggtcggattcatttccattggtaa 258  Q
     | ||||||  ||||||||||||| ||||| |||| | |||||||||||||| ||||||| |||||||||||| | | |||| |||||| |||||||| |    
T  29689208 actaaaaatgaccgtacaaacttgttgtctagtgtgtcagtgagtggttggtaggtggatccgctaccgtgttggcgatcgg-ttcattgccattggtga 29689110  T
Q  259 aaggttggagttcagacttatgcctaggttgtgcttgtataatcgcttgatgtgggctagaaatggctgattaatttgttgttgatcatcgcaataaacg 358  Q
    | |||||||| |||||||| ||||||||||||||| |||| | | | || |||||||| |||||| ||||||||||||||||| ||||||||| ||||||    
T  29689109 a-ggttggagctcagacttgtgcctaggttgtgctagtatgaccacatgttgtgggctggaaatgactgattaatttgttgttaatcatcgcagtaaacg 29689011  T
Q  359 gttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccacttgcaagcatttgtc 428  Q
     |||||||| || |||||| ||||||||||||||| ||||||| ||||||||||||| ||||||||||||    
T  29689010 attggtgcgcgtggattcgctaattaccgtgttggcggtcgaacccactccccactttcaagcatttgtc 29688941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 102 - 423
Target Start/End: Complemental strand, 37011435 - 37011115
Alignment:
Q  102 gagcatgtgggttatatcggatggccgctccattggacggaggatccaaattgataggccaaaaatagccgtacaaacttgatgtcttgtgtcttagtga 201  Q
    |||| |||||||| | | ||||||  |||||||| || ||||||| || |||||||||| | |||| | |||||||||||||||| | ||||||||||||    
T  37011435 gagcgtgtgggttttgttggatggtagctccatttgatggaggattcagattgataggctagaaatggtcgtacaaacttgatgtatggtgtcttagtga 37011336  T
Q  202 gtggttggtgggtggattcgctaccgtgttcgtggtcggattcatttccattggtaaaaggttggagttcagacttatgcctaggttgtgcttgtataat 301  Q
    |||||||||| |||||||||||| |||||| | ||||||||||||| |||||||| |||||||||| || |||||| |||||| ||||||||||| | ||    
T  37011335 gtggttggtgagtggattcgctatcgtgttggcggtcggattcattgccattggt-aaaggttggattttagacttgtgcctatgttgtgcttgtgtgat 37011237  T
Q  302 cgcttgatgtgggctagaaatggctgattaat-ttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcga 400  Q
    |||||  ||||||||| ||||||||||||||| ||||| |||||||||| | ||||| ||||||||  || |||| | ||||||  |||||   |||| |    
T  37011236 cgctttttgtgggctaaaaatggctgattaatattgtt-ttgatcatcgtagtaaacagttggtgcaggtggatttgctaattattgtgttaacggtcaa 37011138  T
Q  401 atccactccccacttgcaagcat 423  Q
    || |||||||||||| |||||||    
T  37011137 attcactccccactttcaagcat 37011115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 61 - 277
Target Start/End: Complemental strand, 29689539 - 29689323
Alignment:
Q  61 gggttggtgtgatttgaatcagttctgcac--tttcgggttccgagcatgtgggttatatcggatggccgctccattggacggaggatccaaattgatag 158  Q
    |||||||||||||| || |||  |||||||  |||| | |||||||  |||||||||| ||||||||| |||| ||| |||||||||| |||||||||||    
T  29689539 gggttggtgtgattcgactcaaatctgcacattttcagcttccgagtgtgtgggttatgtcggatggcggctctatttgacggaggattcaaattgatag 29689440  T
Q  159 gccaaaaatagccgtacaaacttgatgtcttgtgtcttagtgagtggttggtgggtggattcgctaccgtgttcgtggtcggattcatttccattggtaa 258  Q
     | ||||||  ||||||||||||| ||||| |||| | |||||||||||||| |||||||||||||||||||| | |||||| |||||| ||||||||      
T  29689439 actaaaaatgaccgtacaaacttgttgtctagtgtgtcagtgagtggttggtaggtggattcgctaccgtgttggcggtcgg-ttcattgccattggt-g 29689342  T
Q  259 aaggttggagttcagactt 277  Q
    |||||||||| ||||||||    
T  29689341 aaggttggagctcagactt 29689323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 311 - 407
Target Start/End: Complemental strand, 23493466 - 23493371
Alignment:
Q  311 tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccact 407  Q
    ||||||||||||||||| |||||||||||| | |||| ||| ||||| |||||| || || ||||||  |||||||||||||| ||| |||||||||    
T  23493466 tgggctagaaatggctg-ttaatttgttgtagttcatggcagtaaacagttggtacgagtggattcgcgaattaccgtgttggcggtagaatccact 23493371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 414
Target Start/End: Complemental strand, 34806387 - 34806285
Alignment:
Q  311 tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc 410  Q
    ||||| ||||||| ||| |||||||| |||||||||| ||| ||||| ||| ||||||||  ||| ||||||||||||||||| ||| |||||  |||||    
T  34806387 tgggccagaaatgactg-ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctgctccc 34806289  T
Q  411 cact 414  Q
    ||||    
T  34806288 cact 34806285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 414
Target Start/End: Original strand, 36316192 - 36316294
Alignment:
Q  311 tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc 410  Q
    ||||| ||||||| ||| |||||||| |||||||||| ||| ||||| ||| ||||||||  |||  |||||||||||||||| ||| ||||| ||||||    
T  36316192 tgggccagaaatgactg-ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaattttttaattaccgtgttggcggttgaatctactccc 36316290  T
Q  411 cact 414  Q
    ||||    
T  36316291 cact 36316294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 414
Target Start/End: Original strand, 36330401 - 36330503
Alignment:
Q  311 tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc 410  Q
    ||||| ||||||| ||| |||||||| |||||||||| ||| ||||| ||| ||||||||  |||  |||||||||||||||| ||| ||||| ||||||    
T  36330401 tgggccagaaatgactg-ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaattttttaattaccgtgttggcggttgaatctactccc 36330499  T
Q  411 cact 414  Q
    ||||    
T  36330500 cact 36330503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 328 - 414
Target Start/End: Original strand, 53095190 - 53095276
Alignment:
Q  328 attaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    ||||| ||||||| ||| |||||| |||| ||||||||| ||| ||||||| | |||||||||||||||| | |||||||| |||||    
T  53095190 attaacttgttgtggattatcgcagtaaatggttggtgcatgtagattcgtcatttaccgtgttggtggttggatccactctccact 53095276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 311 - 412
Target Start/End: Original strand, 27020242 - 27020342
Alignment:
Q  311 tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc 410  Q
    ||||| ||||||| ||| |||||||| |||||||||| ||| ||||| ||| |||| |||  ||| ||||||||||||||||| ||| ||||| ||||||    
T  27020242 tgggccagaaatgactg-ttaatttgatgttgatcatagcagtaaacagttagtgcatgtgaatttgttaattaccgtgttggcggttgaatctactccc 27020340  T
Q  411 ca 412  Q
    ||    
T  27020341 ca 27020342  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 414
Target Start/End: Complemental strand, 39296002 - 39295917
Alignment:
Q  329 ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||||| |||||||||| ||| ||||| ||| ||| |||| |||| |||||||||||||||||  || ||||| ||||||||||    
T  39296002 ttaatttgatgttgatcatagcagtaaacagttagtgtgtgtggatttgttaattaccgtgttggctgttgaatctactccccact 39295917  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 414
Target Start/End: Complemental strand, 5948270 - 5948185
Alignment:
Q  329 ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||||| |||||||||| ||| ||||| ||| ||||||||  ||  ||||||||||||||||| ||| ||||| ||| ||||||    
T  5948270 ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatctgttaattaccgtgttggcggttgaatctacttcccact 5948185  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 333
Target Start/End: Complemental strand, 34851678 - 34851624
Alignment:
Q  279 tgcctaggttgtgcttgtataatcgcttgatgtgggctagaaatggctgattaat 333  Q
    ||||| ||||||| ||||||  ||||||||||||||| |||||||||| ||||||    
T  34851678 tgcctcggttgtgtttgtatgttcgcttgatgtgggccagaaatggctaattaat 34851624  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 329 - 393
Target Start/End: Original strand, 32107426 - 32107490
Alignment:
Q  329 ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttgg 393  Q
    |||||||||||| |   ||||||||||| |||||||||| || |||| |||| ||||||||||||    
T  32107426 ttaatttgttgtggcctatcgcaataaatggttggtgcgagtggatttgttatttaccgtgttgg 32107490  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 339 - 427
Target Start/End: Original strand, 33287452 - 33287540
Alignment:
Q  339 gttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccacttgcaagcatttgt 427  Q
    |||||||| |||| |||||   ||||||  || |||| |||| |||||||||||| |||| |||||| |||||| || |||||||||||    
T  33287452 gttgatcaccgcagtaaacaagtggtgcacgtggatttgttatttaccgtgttggcggtcaaatccagtccccaatttcaagcatttgt 33287540  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 427
Target Start/End: Complemental strand, 34851621 - 34851554
Alignment:
Q  359 gttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccacttgcaagcatttgt 427  Q
    ||||||||| ||  |||||||||||||||||||||  ||||||| ||| ||||| || |||||||||||    
T  34851621 gttggtgcgcgtgaattcgttaattaccgtgttggcagtcgaattcac-ccccattttcaagcatttgt 34851554  T

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Target: chr6 (Bit Score: 120; Significance: 3e-61; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 61 - 429
Target Start/End: Original strand, 11121112 - 11121468
Alignment:
Q  61 gggttggtgtgatttgaatcagttctgcactttcgggttccgagcatgtgggttatatcggatggccgctccattggacggaggatccaaattgataggc 160  Q
    |||||||||| |||  |||||| |||||||||||| ||||  ||| |||||||| | || |||||| |||||||| |||  || || || ||||||||||    
T  11121112 gggttggtgttattcaaatcagatctgcactttcgagttctaagcgtgtgggttctgtcagatggcagctccatttgacaaagtattcagattgataggc 11121211  T
Q  161 caaaaatagccgtacaaacttgatgtcttgtgtcttagtgagtggttggtgggtggattcgctaccgtgttcgtggtcggattcatttccattggtaaaa 260  Q
     | |||  | | |||||||||| |||||||||||| | ||||||||| | ||||| ||||||||||| ||| | ||||  ||||||| ||||||||||||    
T  11121212 tagaaacggtcatacaaacttgttgtcttgtgtctcaatgagtggttcgcgggtgtattcgctaccgcgttggcggtcaaattcattgccattggtaaaa 11121311  T
Q  261 ggttggagttcagacttatgcctaggttgtgcttgtataatcgcttgatgtgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggt 360  Q
    |||||||||||| | || |||||| |||||||||| || || ||||| ||||||| ||            |||||| | |||||||||||| ||||||||    
T  11121312 ggttggagttcataattgtgcctaagttgtgcttgcatgatggcttgttgtgggccag------------aatttgctattgatcatcgcagtaaacggt 11121399  T
Q  361 tggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccacttgcaagcatttgtct 429  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||    
T  11121400 tggtgcgtgtggattcgttaattaccgtgttggcggtcgaatccactccccactttcaagcatctgtct 11121468  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 353 - 414
Target Start/End: Original strand, 1122221 - 1122282
Alignment:
Q  353 taaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    ||||| |||| ||||||| |||||| ||||||||||||||| ||||||||||||||||||||    
T  1122221 taaaccgttgttgcgtgtggattcgctaattaccgtgttggcggtcgaatccactccccact 1122282  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 22460563 - 22460488
Alignment:
Q  338 tgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccac 413  Q
    ||||||| |||||| |||| |||||||| ||||||||||| || |||||||||||| ||| ||||| |||||||||    
T  22460563 tgttgatgatcgcattaaatggttggtgtgtgttgattcgctatttaccgtgttggcggttgaatctactccccac 22460488  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 18898895 - 18898980
Alignment:
Q  329 ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||||| |||||||||| ||| ||||| ||| ||||||||  ||| ||||||||||||||||| ||| ||||| ||| ||||||    
T  18898895 ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctacttcccact 18898980  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 329 - 414
Target Start/End: Complemental strand, 15559752 - 15559665
Alignment:
Q  329 ttaatttgttgttgatcatc--gcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||| ||||||||||||||   ||| ||||  ||| |||||||| |||||| ||||||| |||||||| ||||||||||| |||||||    
T  15559752 ttaagttgttgttgatcatatagcagtaaatagtttgtgcgtgtggattcgctaattacagtgttggtagtcgaatccaccccccact 15559665  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 330
Target Start/End: Original strand, 24316543 - 24316594
Alignment:
Q  279 tgcctaggttgtgcttgtataatcgcttgatgtgggctagaaatggctgatt 330  Q
    ||||| |||||||||||||| ||| |||| ||| ||||||||||||||||||    
T  24316543 tgcctcggttgtgcttgtatgatctcttgttgtaggctagaaatggctgatt 24316594  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 427
Target Start/End: Original strand, 720280 - 720347
Alignment:
Q  359 gttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccacttgcaagcatttgt 427  Q
    ||||||||| ||  ||||||||||||||||||||| |||| ||||||| ||| | || |||||||||||    
T  720280 gttggtgcgcgtgaattcgttaattaccgtgttggcggtcaaatccac-ccctattttcaagcatttgt 720347  T

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Target: chr8 (Bit Score: 93; Significance: 4e-45; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 61 - 333
Target Start/End: Original strand, 3730158 - 3730429
Alignment:
Q  61 gggttggtgtgatttgaatcagttctgcactttcgggttccgagcatgtgggttatatcggatggccgctccattggacggaggatccaaattgataggc 160  Q
    |||||||||||| | || |||| ||| |||||||| ||||||||| |||| ||||| ||  ||| | | || ||| || |||||||    ||||||| ||    
T  3730158 gggttggtgtgactcgactcagatcttcactttcgtgttccgagcgtgtgagttatgtcaaatgacagttctatttgagggaggattttgattgatatgc 3730257  T
Q  161 caaaaatagccgtacaaacttgatgtcttgtgtcttagtgagtggttggtgggtggattcgctaccgtgttcgtggtcggattcatttccattggtaaaa 260  Q
     | |||| | |||||||||||| |||||||||||| ||| |||||||||||||| |||||| ||||||||| | ||||||||||||| |||||||| |||    
T  3730258 tagaaattgtcgtacaaacttgttgtcttgtgtctcagttagtggttggtgggtagattcgataccgtgtttgcggtcggattcattgccattggt-aaa 3730356  T
Q  261 ggttggagttcagacttatgcctaggttgtgcttgtataatcgcttgatgtgggctagaaatggctgattaat 333  Q
    ||||| ||||| |||||  |||||||| |||||||||| |||||||| ||| ||| |||||||||||||||||    
T  3730357 ggttgtagttcggacttgagcctaggtagtgcttgtatgatcgcttgttgttggccagaaatggctgattaat 3730429  T

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Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 273 - 428
Target Start/End: Original strand, 18464653 - 18464808
Alignment:
Q  273 gacttatgcctaggttgtgcttgtataatcgcttgatgtgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttg 372  Q
    ||||| |||||||||||||| |||||  ||||||||||||||| ||||||||||||||||||||  ||||||||||||| ||||| | ||||||| || |    
T  18464653 gacttgtgcctaggttgtgcctgtatgttcgcttgatgtgggccagaaatggctgattaatttgccgttgatcatcgcagtaaacaggtggtgcgcgtgg 18464752  T
Q  373 attcgttaattaccgtgttggtggtcgaatccactccccacttgcaagcatttgtc 428  Q
    |||||||| ||||||||| || ||||||||||||||||||||| ||||||| ||||    
T  18464753 attcgttatttaccgtgtcggcggtcgaatccactccccactttcaagcatctgtc 18464808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 39617897 - 39617982
Alignment:
Q  329 ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||||| |||||||||| ||| ||||| ||| ||||||||  ||| ||||||||||||||||||||| ||||| ||||||||||    
T  39617897 ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggtggttgaatctactccccact 39617982  T

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Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 329 - 429
Target Start/End: Complemental strand, 31441884 - 31441784
Alignment:
Q  329 ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccacttgcaagcatttgtc 428  Q
    |||||||| ||||||| |||||| |||||| | ||||||||| |||| |||||| || ||||||| ||| |||||||||||||||| ||||| || ||||    
T  31441884 ttaatttgctgttgatgatcgcagtaaacgataggtgcgtgtggatttgttaatgactgtgttggcggttgaatccactccccactagcaagaatctgtc 31441785  T
Q  429 t 429  Q
    |    
T  31441784 t 31441784  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 12498711 - 12498796
Alignment:
Q  329 ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||||| |||||||||| ||| ||||| ||| ||||||||  ||| ||||||||||||||||| ||| ||||| ||||| ||||    
T  12498711 ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctactcctcact 12498796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 18381355 - 18381440
Alignment:
Q  329 ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||||| |||||||||| ||| ||||| ||| ||||||||  ||| ||||||||||||||||| ||| ||||| ||| ||||||    
T  18381355 ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctacttcccact 18381440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 413
Target Start/End: Original strand, 22935467 - 22935548
Alignment:
Q  331 aatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccac 413  Q
    |||||||||| | | ||| ||| ||| ||||||||  ||| |||||||||| ||||||||||| |||||||||||||||||||    
T  22935467 aatttgttgtggtttatcacaacaaatggttggtga-tgtggattcgttaactaccgtgttggcggtcgaatccactccccac 22935548  T

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Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 403
Target Start/End: Complemental strand, 6420991 - 6420917
Alignment:
Q  329 ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatc 403  Q
    |||||||| |||||||||| ||| ||||| ||| ||||||||  ||  ||||||||||||||||| ||| |||||    
T  6420991 ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatctgttaattaccgtgttggcggttgaatc 6420917  T

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Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 130 - 270
Target Start/End: Complemental strand, 12111773 - 12111633
Alignment:
Q  130 tccattggacggaggatccaaattgataggccaaaaatagccgtacaaacttgatgtcttgtgtcttagtgagtggttggtgggtggattcgctaccgtg 229  Q
    |||||| |||||||||   | |||||||||| | |||| |||||  ||||||||||| |||||||| || ||||| ||||| |||||||||||||| |||    
T  12111773 tccatttgacggaggagtaagattgataggctagaaatggccgtttaaacttgatgttttgtgtctcagcgagtgattggttggtggattcgctacggtg 12111674  T
Q  230 ttcgtggtcggattcatttccattggtaaaaggttggagtt 270  Q
    || |  ||| |||| ||| ||||| ||||||||||||||||    
T  12111673 ttggcagtcagatttattaccatttgtaaaaggttggagtt 12111633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 320 - 414
Target Start/End: Complemental strand, 19622668 - 19622575
Alignment:
Q  320 aatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||||| |||||||| | | ||||||||||  ||  |||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||    
T  19622668 aatggctg-ttaatttgctatagatcatcgcagcaactggttggtgtgtgtggattcgttaattaccgtgttggtggtcaaatccactccccact 19622575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 4647942 - 4648027
Alignment:
Q  329 ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||||| |||||||||| ||| ||||| ||| |||| ||| |||| ||||||||||||||||| ||| ||||| ||||||||||    
T  4647942 ttaatttgatgttgatcatagcagtaaacagttagtgcatgtggatttgttaattaccgtgttggcggttgaatctactccccact 4648027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 414
Target Start/End: Original strand, 7647550 - 7647645
Alignment:
Q  317 agaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||||||| || |||||||||| ||| ||| ||| ||| ||||||||  ||| |||||||||| ||||||||||| |||||||| |||||||||||    
T  7647550 agaaatggct-atgaatttgttgtggattatcacaacaaatggttggtga-tgtggattcgttaactaccgtgttggcggtcgaatgcactccccact 7647645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 359 - 414
Target Start/End: Complemental strand, 17419151 - 17419096
Alignment:
Q  359 gttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||||||||| |||||| ||||||||||||||| |||||||| ||||| |||||    
T  17419151 gttggtgcgtgtggattcgctaattaccgtgttggcggtcgaattcactcgccact 17419096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 414
Target Start/End: Complemental strand, 30960906 - 30960864
Alignment:
Q  372 gattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||||||||||||||||||| |||||||||| |||||||||    
T  30960906 gattcgttaattaccgtgttggcggtcgaatccgctccccact 30960864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 329 - 414
Target Start/End: Complemental strand, 40267896 - 40267811
Alignment:
Q  329 ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||||| |||||||||| ||| |||||  || ||||||||  ||| ||||||||||||||||| |||  |||| ||||| ||||    
T  40267896 ttaatttgatgttgatcatagcagtaaacaattagtgcgtgtgaatttgttaattaccgtgttggcggtttaatctactcctcact 40267811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 311 - 414
Target Start/End: Original strand, 16044424 - 16044526
Alignment:
Q  311 tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc 410  Q
    ||||||| ||||| ||| ||||||||||||||||||||| | |||| |||||||||| || |||||| |||||||| |||||| ||||||||||  ||||    
T  16044424 tgggctataaatgactg-ttaatttgttgttgatcatcgtagtaaatggttggtgcgggtggattcgctaattaccatgttggcggtcgaatcctttccc 16044522  T
Q  411 cact 414  Q
    ||||    
T  16044523 cact 16044526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 5808337 - 5808422
Alignment:
Q  329 ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||||| |||||||||| ||| ||||| ||| ||||||||  ||| ||||||||||||||||||||| ||||| ||||||||||    
T  5808337 ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggtggttgaatctactccccact 5808422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 1594551 - 1594636
Alignment:
Q  329 ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||||| |||||||||| ||| ||||| ||| |||||||| |||| ||||||||||||||||| ||| ||||| ||||| ||||    
T  1594551 ttaatttgatgttgatcatagcagtaaactgttagtgcgtgtggatttgttaattaccgtgttggcggttgaatctactccacact 1594636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 414
Target Start/End: Complemental strand, 16485046 - 16484944
Alignment:
Q  311 tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc 410  Q
    ||||| ||||||| ||| |||||||| |||||||||| ||| ||||| ||| ||| |||| |||| ||||||||||||||||| ||| ||||| |||||     
T  16485046 tgggccagaaatgactg-ttaatttgatgttgatcatagcagtaaactgttagtgtgtgtggatttgttaattaccgtgttggcggttgaatctactcca 16484948  T
Q  411 cact 414  Q
    ||||    
T  16484947 cact 16484944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 414
Target Start/End: Original strand, 39560889 - 39560991
Alignment:
Q  311 tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc 410  Q
    ||||| ||||||| ||| |||||||| |||||||||| ||| ||||| ||| |||||| | |||| ||||||||||||||||| ||| ||||| |||||     
T  39560889 tgggccagaaatgactg-ttaatttgatgttgatcatagcagtaaactgttagtgcgtatggatttgttaattaccgtgttggcggttgaatctactcca 39560987  T
Q  411 cact 414  Q
    ||||    
T  39560988 cact 39560991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 414
Target Start/End: Complemental strand, 40835141 - 40835039
Alignment:
Q  311 tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc 410  Q
    ||||| ||||||| ||| |||||||| |||||||||| ||| ||||| ||| |||| ||| |||| ||||||||||||||||| ||| ||||| |||||     
T  40835141 tgggccagaaatgactg-ttaatttgatgttgatcatagcagtaaactgttagtgcatgtggatttgttaattaccgtgttggcggttgaatctactcca 40835043  T
Q  411 cact 414  Q
    ||||    
T  40835042 cact 40835039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 317 - 414
Target Start/End: Original strand, 640968 - 641063
Alignment:
Q  317 agaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||||||| || |||||||||| ||| ||| ||| ||| ||| ||||  ||| |||||||||| ||||||||||| ||||||||||||||||||||    
T  640968 agaaatggct-atgaatttgttgtggattatcacaacaaatggtcggtga-tgtggattcgttaactaccgtgttggcggtcgaatccactccccact 641063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 414
Target Start/End: Complemental strand, 39004965 - 39004880
Alignment:
Q  329 ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||||| |||||||||| ||  ||||| ||| |||||||| |||| ||||||||||||||||  ||| ||||| ||||||||||    
T  39004965 ttaatttgatgttgatcatagctgtaaacagttagtgcgtgtggatttgttaattaccgtgttgacggttgaatctactccccact 39004880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 414
Target Start/End: Complemental strand, 16482580 - 16482495
Alignment:
Q  329 ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||||| |||||||||| ||| ||||| ||| ||||||||  ||  ||||||||||||||||| ||| ||||| ||| ||||||    
T  16482580 ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatctgttaattaccgtgttggcggttgaatctacttcccact 16482495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 3335960 - 3336045
Alignment:
Q  329 ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||||| |||||||||| ||| ||||| ||| |||||||| |||| ||||||||||||||||| ||| ||||| ||||||||||    
T  3335960 ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtggatttgttaattaccgtgttggcggttgaatctactccccact 3336045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 311 - 414
Target Start/End: Complemental strand, 22402506 - 22402404
Alignment:
Q  311 tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc 410  Q
    ||||| ||||||| ||| |||||||| |||||||||| ||| ||||| ||| |||||||| |||| ||||||||||||||||| ||| ||||| |||||     
T  22402506 tgggccagaaatgactg-ttaatttgatgttgatcatagcagtaaactgttagtgcgtgtggatttgttaattaccgtgttggcggttgaatctactcca 22402408  T
Q  411 cact 414  Q
    ||||    
T  22402407 cact 22402404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 311 - 414
Target Start/End: Original strand, 33951663 - 33951765
Alignment:
Q  311 tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc 410  Q
    ||||| ||||||| || ||||||||| |||||||||| ||| ||||| ||| |||||||| ||||  |||||||||||||||| ||| ||||| ||||||    
T  33951663 tgggccagaaatgact-attaatttgatgttgatcatagcagtaaacagttagtgcgtgtggattttttaattaccgtgttggcggttgaatctactccc 33951761  T
Q  411 cact 414  Q
    ||||    
T  33951762 cact 33951765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 332 - 414
Target Start/End: Original strand, 47330045 - 47330127
Alignment:
Q  332 atttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    ||||| |||||||||| ||| ||||| ||| |||||||| |||| ||||||||||||||||| ||| ||||| ||||||||||    
T  47330045 atttgatgttgatcatagcagtaaacagttagtgcgtgtggatttgttaattaccgtgttggcggttgaatctactccccact 47330127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 338 - 414
Target Start/End: Original strand, 4545694 - 4545770
Alignment:
Q  338 tgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||||||||||| |||| |||||||  ||||||||||| || ||||| |||||| ||||||||||| ||||||||    
T  4545694 tgttgatcatcgcagtaaatggttggtatgtgttgattcgctatttaccatgttggcggtcgaatccaatccccact 4545770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 414
Target Start/End: Complemental strand, 37969276 - 37969174
Alignment:
Q  311 tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc 410  Q
    ||||| ||||||| ||| |||||||| |||||||||| ||| ||||| ||| ||| |||| |||| ||||||||||||||||| ||| ||||| |||||     
T  37969276 tgggccagaaatgactg-ttaatttgatgttgatcatagcagtaaactgttagtgtgtgtggatttgttaattaccgtgttggcggttgaatctactcca 37969178  T
Q  411 cact 414  Q
    ||||    
T  37969177 cact 37969174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 414
Target Start/End: Original strand, 25899153 - 25899221
Alignment:
Q  346 atcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||| |||||||||||||| ||| | ||| |||||||||||||||| ||||||||| |||| |||||    
T  25899153 atcgcactaaacggttggtgcatgtggtttcattaattaccgtgttggcggtcgaatctactctccact 25899221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 414
Target Start/End: Original strand, 4062369 - 4062471
Alignment:
Q  311 tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc 410  Q
    ||||| ||||||| ||| |||||||| |||| ||||| ||| ||||| ||| ||| |||| |||| ||||||||||||||||| ||| ||||| |||||     
T  4062369 tgggccagaaatgactg-ttaatttgatgttaatcatagcagtaaactgttagtgtgtgtggatttgttaattaccgtgttggcggttgaatctactcca 4062467  T
Q  411 cact 414  Q
    ||||    
T  4062468 cact 4062471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 408
Target Start/End: Complemental strand, 23687768 - 23687689
Alignment:
Q  328 attaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactc 408  Q
    ||||||||||||| ||| |||||| |||| ||||||||| || |||||| | |||||| ||||||  ||||||||||||||    
T  23687768 attaatttgttgtggattatcgcagtaaatggttggtgcatg-tgattcatcaattactgtgttgccggtcgaatccactc 23687689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 328 - 408
Target Start/End: Complemental strand, 24060005 - 24059926
Alignment:
Q  328 attaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactc 408  Q
    ||||||||||||| ||| |||||| |||| ||||||||| || |||||| | |||||| ||||||  ||||||||||||||    
T  24060005 attaatttgttgtggattatcgcagtaaatggttggtgcatg-tgattcatcaattactgtgttgccggtcgaatccactc 24059926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 46028310 - 46028379
Alignment:
Q  359 gttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccacttgcaagcatttgtct 429  Q
    |||||||| |||  ||||||||||||| ||||||| |||||||||||| ||| | || |||||||||||||    
T  46028310 gttggtgcttgtgaattcgttaattacagtgttggcggtcgaatccac-ccctattttcaagcatttgtct 46028379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 1576078 - 1576131
Alignment:
Q  279 tgcctaggttgtgcttgtataatcgcttgatgtgggctagaaatggctgattaa 332  Q
    |||| ||||||||||||||| ||| |||| ||||||| |||||||| |||||||    
T  1576078 tgccaaggttgtgcttgtatgatcacttgttgtgggccagaaatggttgattaa 1576131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 28641570 - 28641655
Alignment:
Q  329 ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||||| |||||||||| ||| ||||| ||| ||||||||  ||| ||||||||||||||||||||| ||||| ||||||||||    
T  28641570 ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggtggttgaatctactccccact 28641655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 414
Target Start/End: Complemental strand, 2027926 - 2027824
Alignment:
Q  311 tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc 410  Q
    ||||| ||||||| ||| |||||||| |||||||||| | | ||||| ||| |||||||| |||| ||||||||||||||||| ||| ||||| |||||     
T  2027926 tgggccagaaatgactg-ttaatttgatgttgatcatagtagtaaactgttagtgcgtgtggatttgttaattaccgtgttggcggttgaatctactcca 2027828  T
Q  411 cact 414  Q
    ||||    
T  2027827 cact 2027824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 311 - 414
Target Start/End: Complemental strand, 49008271 - 49008169
Alignment:
Q  311 tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc 410  Q
    ||||| ||||||| ||| |||||||| |||||||||| ||| ||||| ||| |||||||| |||| |||||||||||| |||| ||| ||||| |||||     
T  49008271 tgggccagaaatgactg-ttaatttgatgttgatcatagcagtaaactgttagtgcgtgtggatttgttaattaccgtattggcggttgaatctactcca 49008173  T
Q  411 cact 414  Q
    ||||    
T  49008172 cact 49008169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 32829231 - 32829300
Alignment:
Q  359 gttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccacttgcaagcatttgtct 429  Q
    ||||||||| ||  ||||||||||||||||||||| |||||||||||| ||||| || |||||||||||||    
T  32829231 gttggtgcgcgtgaattcgttaattaccgtgttggcggtcgaatccac-ccccattttcaagcatttgtct 32829300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 414
Target Start/End: Complemental strand, 2844039 - 2843954
Alignment:
Q  329 ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||||| |||||||||| ||| ||||| ||| |||| |||  ||| ||||||||||||||||| ||| ||||| ||||||||||    
T  2844039 ttaatttgatgttgatcatagcagtaaactgttagtgcatgtgaatttgttaattaccgtgttggcggttgaatctactccccact 2843954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 414
Target Start/End: Complemental strand, 18414618 - 18414533
Alignment:
Q  329 ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||||| |||||||||| ||| ||||| ||| ||||||||  ||| ||||||||||||||||| ||| ||||| ||| ||||||    
T  18414618 ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctacttcccact 18414533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 32519749 - 32519834
Alignment:
Q  329 ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||||| |||||||||| ||| ||||| ||| ||||||||  ||| ||||||||||||||||| ||| ||||| ||| ||||||    
T  32519749 ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctacttcccact 32519834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 330 - 414
Target Start/End: Complemental strand, 45541547 - 45541463
Alignment:
Q  330 taatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    ||||||| |||||||||| ||| ||||| ||| ||| |||| |||| ||||||||||||||||| ||| ||||| ||||| ||||    
T  45541547 taatttgatgttgatcatagcagtaaactgttagtgtgtgtggatttgttaattaccgtgttggcggttgaatctactccacact 45541463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 273 - 348
Target Start/End: Complemental strand, 36085932 - 36085857
Alignment:
Q  273 gacttatgcctaggttgtgcttgtataatcgcttgatgtgggctagaaatggctgattaatttgttgttgatcatc 348  Q
    ||||||||  ||||||||||||||||  | ||||| ||||||| ||| ||||||||| ||||||| ||||||||||    
T  36085932 gacttatgtataggttgtgcttgtatgtttgcttgttgtgggccagagatggctgataaatttgtggttgatcatc 36085857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 429
Target Start/End: Original strand, 5965116 - 5965185
Alignment:
Q  359 gttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccacttgcaagcatttgtct 429  Q
    ||||||||| ||  ||||||||||||||||||||| |||||||| ||| ||||| || |||||||||||||    
T  5965116 gttggtgcgcgtgaattcgttaattaccgtgttggcggtcgaattcac-ccccattttcaagcatttgtct 5965185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 359 - 429
Target Start/End: Complemental strand, 15853407 - 15853338
Alignment:
Q  359 gttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccacttgcaagcatttgtct 429  Q
    ||||||||| ||  ||||||||||||||||||||| |||||||||||| ||| | || |||||||||||||    
T  15853407 gttggtgcgcgtgaattcgttaattaccgtgttggcggtcgaatccac-ccctattttcaagcatttgtct 15853338  T

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Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 414
Target Start/End: Complemental strand, 8110775 - 8110690
Alignment:
Q  329 ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||||| |||||||||| ||| ||||   || ||||||||  ||| ||||||||||||||||| ||| ||||| ||||||||||    
T  8110775 ttaatttgatgttgatcatagcagtaaatatttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctactccccact 8110690  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 414
Target Start/End: Complemental strand, 24779960 - 24779858
Alignment:
Q  311 tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc 410  Q
    ||||| ||||||| ||| ||| |||| |||||||||| | | ||||| ||| |||||| | |||| ||||||||||||||| | ||| ||||| ||||||    
T  24779960 tgggccagaaatgactgttta-tttgatgttgatcatagaagtaaacagttagtgcgtctggatttgttaattaccgtgttagcggttgaatctactccc 24779862  T
Q  411 cact 414  Q
    ||||    
T  24779861 cact 24779858  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 279 - 333
Target Start/End: Original strand, 32829166 - 32829220
Alignment:
Q  279 tgcctaggttgtgcttgtataatcgcttgatgtgggctagaaatggctgattaat 333  Q
    ||||| ||||||| ||||||  ||||||||||||||| |||||||||| ||||||    
T  32829166 tgcctcggttgtgtttgtatgttcgcttgatgtgggccagaaatggctaattaat 32829220  T

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Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 329 - 414
Target Start/End: Original strand, 194652 - 194737
Alignment:
Q  329 ttaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccccact 414  Q
    |||||||| |||||||||| ||| ||||| ||| ||||||||  ||| ||||||||||||||||| ||| ||||| ||| ||||||    
T  194652 ttaatttgatgttgatcatagcagtaaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatctacttcccact 194737  T

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Target: scaffold0256 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 311 - 403
Target Start/End: Original strand, 4019 - 4110
Alignment:
Q  311 tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatc 403  Q
    ||||| ||||||| ||| |||||||| |||||||||| | ||||||| ||| ||||||||  ||| ||||||||||||||||| ||| |||||    
T  4019 tgggccagaaatgactg-ttaatttgatgttgatcatagaaataaacagttagtgcgtgtgaatttgttaattaccgtgttggcggttgaatc 4110  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 415
Target Start/End: Complemental strand, 20470 - 20367
Alignment:
Q  311 tgggctagaaatggctgattaatttgttgttgatcatcgcaataaacggttggtgcgtgttgattcgttaattaccgtgttggtggtcgaatccactccc 410  Q
    ||||| |||||||| | ||||||||||||| |||  |||||  ||| ||||||| ||||| ||||||||| ||| |||| ||| ||||| ||||| |||     
T  20470 tgggccagaaatggtt-attaatttgttgtggattgtcgcagcaaatggttggtacgtgtagattcgttagttatcgtgctggcggtcggatccattcca 20372  T
Q  411 cactt 415  Q
    |||||    
T  20371 cactt 20367  T

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