View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8509_low_15 (Length: 406)
Name: NF8509_low_15
Description: NF8509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8509_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 21 - 390
Target Start/End: Original strand, 7108812 - 7109181
Alignment:
| Q |
21 |
aatatgagtttaaaatgacctctatccaattacaaatgttttcattaaaaccaaaagctttcaaaatcttcaaaagaaattttcattccacagtgtcaaa |
120 |
Q |
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| T |
7108812 |
aatatgagtttaaaatgacctctatccaattccaaatgttttcattaaaaccaaaagctttcaaaatcttcaaaagaaattttcattccacagtgtcaaa |
7108911 |
T |
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| Q |
121 |
agctttataaatgtctattttaagggcaagattacctccaaaagatctattatggagaagatcggttgcctctcaagtgaggttgatacactctttgatt |
220 |
Q |
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| T |
7108912 |
agctttataaatgtctattttaagggcaagattacctccaaaagatctattatggcgaagatcgggtgcctctcaagtgaggttgatgcactctttgatt |
7109011 |
T |
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| Q |
221 |
tgtctttgttgaataaatcctctttgatgattagaaatgaggttaggcatgattctagctaacctttcagcaatcactttggttataattttaaacttga |
320 |
Q |
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||||| |||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7109012 |
tgtctgtgttgaataaattctctttgctgcttagaaatgaggttaggcatgattctagctaacctttcagcaatcactttggttataattttaaacttga |
7109111 |
T |
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| Q |
321 |
agttatctaaagctataggcctatattgctccacacagtcaacaccttgaaacttaggtatgggaataat |
390 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7109112 |
agttatctaaagctataggtctatattgctccacacagtcaataccttgaaacttaggtatgggaataat |
7109181 |
T |
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