View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8509_low_17 (Length: 401)
Name: NF8509_low_17
Description: NF8509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8509_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 43633666 - 43634050
Alignment:
| Q |
1 |
acttgaatggtgtgactcattttgtgactaatttacctaccaatattttcagaaattcaaaagtatcatagaaatattccttcaatcccaactatcttct |
100 |
Q |
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| T |
43633666 |
acttgaatggtgtgactcattttgtgactaatttacctaccaatattttcagaaattcaaaagtatcatagaaatattcctataatcccaactatcttct |
43633765 |
T |
|
| Q |
101 |
ttttaatatgatgagnnnnnnnnnnnnnnnnnnnagtggaatgtgcatctaagatagactttagatcacgagattctgtagccacttaccaacatgggaa |
200 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
43633766 |
ttttaatatgatgagttttttccttttttgttttagtggaatgtgcatctaagatagactttagatcacgagattctgtagccacttaagaacatgggaa |
43633865 |
T |
|
| Q |
201 |
gacattgaaaagaaaatgcaaattatatcgtgtttcgttgagattgaacactttgtattagtgatccgttttttattccaacgttaggagacattgggaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
43633866 |
gacattgaaaagaaaatgcaaattatatcgtgtttcgttgagattgaacactttgtattagtgatccgttttttattccaactttaggagacattggaaa |
43633965 |
T |
|
| Q |
301 |
agaaaataagaaagtttatctcaagtaatttgaaatttccaagagtttagaattataaacaattgaattgacgcagtgaataaact |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
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| T |
43633966 |
agaaaataagaaagtttatctcaagtaatttgaaatttccaagagtttagaattatatacaattgaattgacg-agtgaataaact |
43634050 |
T |
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