View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8509_low_18 (Length: 380)
Name: NF8509_low_18
Description: NF8509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8509_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 9 - 306
Target Start/End: Complemental strand, 32223652 - 32223349
Alignment:
| Q |
9 |
tggtggtgatggtggtggttagagaatgaccaaacaatgagtgacggatgtatattcaacaaagacgaaatttgttgcttcatttttctatacaggtgtt |
108 |
Q |
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| T |
32223652 |
tggtggtgatggtggtggttagagaatgaccaaacaatgagtgacggatgtatattcaacaaagacgaaatttgttgcttcatttttctatacaggtgtt |
32223553 |
T |
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| Q |
109 |
gctaaagttctgtaccttgcaccagaattcaatggcc-ttgttttaatttccatttctatttctactactagtggagctgtgaatcttgctttctttcat |
207 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32223552 |
gctaaagttctgtaccttgcaccagaattcaatggcctttgttttaatttccatttctatttctactattagtggagctgtgaatcttgctttctttcat |
32223453 |
T |
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| Q |
208 |
ct-----tactacattaaccatatagtaataatttgaaattgaaagttgaaaactgggggagacctaaactagacaaattaaaacaggtaataatatagt |
302 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32223452 |
cttactatactacattaaccatatagtaataatttgaaattgaaagttgaaaactgggggagacctaaactagacaaattaaaacaggtaataatatagt |
32223353 |
T |
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| Q |
303 |
tttg |
306 |
Q |
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|||| |
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| T |
32223352 |
tttg |
32223349 |
T |
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