View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8509_low_19 (Length: 376)
Name: NF8509_low_19
Description: NF8509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8509_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 7563800 - 7564034
Alignment:
| Q |
9 |
tgagatggacatcattagtcgtgttcatcatcgccatcttgtttcacttgttggatattgtatttctggtggccaaagaatgttggtctatgaatttatt |
108 |
Q |
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| T |
7563800 |
tgagattgacatcattagtcgtgttcatcatcgtcatcttgtttcacttgttggatattgtatttctggtggccaaagaatgttggtctatgaatttatt |
7563899 |
T |
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| Q |
109 |
tccaataacacattggagtatcatctccacggaaagggtcgtcctaccatggattggccgacgagaatgaggatcgcaattggttctgctaaagggcttg |
208 |
Q |
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| T |
7563900 |
tccaataacacattggagtatcatctccacggaaagggtcgtcctaccatggattggccgacgagaatgaggatcgcaattggttctgctaaagggcttg |
7563999 |
T |
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| Q |
209 |
cttatcttcatgaggattgtgagattcttgctccc |
243 |
Q |
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| T |
7564000 |
cttatcttcatgaggattgtgagattcttgctccc |
7564034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 33145775 - 33145653
Alignment:
| Q |
9 |
tgagatggacatcattagtcgtgttcatcatcgccatcttgtttcacttgttggatattgtatttctggtggccaaagaatgttggtctatgaatttatt |
108 |
Q |
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| T |
33145775 |
tgagattgatatcattagtcgtgttcatcatcgtcatcttgtgtcgcttgttggatattgtgtttctggtggacagagaatgttggtttatgaatttgtt |
33145676 |
T |
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| Q |
109 |
tccaataacacattggagtatca |
131 |
Q |
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| T |
33145675 |
ccaaataaaactttggaatatca |
33145653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 33145531 - 33145448
Alignment:
| Q |
151 |
cctaccatggattggccgacgagaatgaggatcgcaattggttctgctaaagggcttgcttatcttcatgaggattgtgagatt |
234 |
Q |
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| T |
33145531 |
cctaccatggattggcctactagaatgagaattgcattaggatctgctagaggacttgcttaccttcatgaagattgtaagatt |
33145448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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