View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8509_low_2 (Length: 544)
Name: NF8509_low_2
Description: NF8509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8509_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Original strand, 43985110 - 43985635
Alignment:
| Q |
1 |
gaagcgaatagagcaaaggcataagtgtaacatccttagcaagaacaccagcaacatccacaccaccattaacacatagagacaacaatatcgaaacaca |
100 |
Q |
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| T |
43985110 |
gaagcgaatagagcaaaggcataagtgtaacatccttagcaagaacaccagcaacatcaacaccaccattaacacatagagacaacaatatcgaaacaca |
43985209 |
T |
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| Q |
101 |
atgttcctttgcagcacgcgaaggagcagatcgcaacagcccagcaatcaacggcaatgcagaagcttccaaaacagcattagctccatcaaaattctca |
200 |
Q |
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| T |
43985210 |
atgttcctttgcagcacgcgaaggagcagatcgcaacagcccagtaatcaacggcaatgcagaagcttccaaaacagcattagctccatcaaaattctca |
43985309 |
T |
|
| Q |
201 |
gcaagtgccgcaagaacagccaaagtttcagtaacaagctcttccttgttgcacaaggtattcaaaatagaaacaagcgcgtgaacagcaccggcttcaa |
300 |
Q |
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| T |
43985310 |
gcaagtgccgcaagaacagccagagtttcagtaacaagctcttccttgttgcacaaggtattcaaaatagaaacaagcgcgtgaacagcaccggcttcaa |
43985409 |
T |
|
| Q |
301 |
gcacacgttgatgattcctaggaagcaaaagaagtccaaaaatggcaaccactgcattctttttcccgcaggttgttccttctttagccaattcaactaa |
400 |
Q |
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| T |
43985410 |
gcacacgttgatgattcctaggaagcaaaagaagtccaaaaatcgcaaccactgcattcttttttccgcaggttgttccttctttagccaattcaactaa |
43985509 |
T |
|
| Q |
401 |
accatgaatcacatcttgattttcacctattaattttctatattctttcactgaacaaagatagaatattatagcagctgcaatttgacgggcttcaaga |
500 |
Q |
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| T |
43985510 |
accatgaatcacatcttgattttcacctattaattttctatattctttcactgaacaaagatagaatattatagctgctgcaatttgacgggcttcaaga |
43985609 |
T |
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| Q |
501 |
ctaagtccatttttcagtacatacac |
526 |
Q |
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| T |
43985610 |
ctaagtccatttttcagtacatacac |
43985635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 419 - 496
Target Start/End: Original strand, 35205835 - 35205912
Alignment:
| Q |
419 |
attttcacctattaattttctatattctttcactgaacaaagatagaatattatagcagctgcaatttgacgggcttc |
496 |
Q |
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|||||| |||||||||||||| || |||||||||||| || || ||||||||| ||||||||| | |||||||||| |
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| T |
35205835 |
attttcgcctattaattttctgtactctttcactgaagtgaggtaaaatattataccagctgcaactcgacgggcttc |
35205912 |
T |
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