View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8509_low_20 (Length: 373)

Name: NF8509_low_20
Description: NF8509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8509_low_20
NF8509_low_20
[»] chr7 (1 HSPs)
chr7 (1-365)||(33110417-33110781)
[»] chr8 (2 HSPs)
chr8 (23-128)||(18551482-18551587)
chr8 (1-186)||(33222002-33222186)
[»] chr1 (1 HSPs)
chr1 (33-128)||(9802725-9802820)
[»] scaffold1416 (1 HSPs)
scaffold1416 (37-79)||(176-218)
[»] chr6 (2 HSPs)
chr6 (37-79)||(6343513-6343555)
chr6 (37-85)||(15514410-15514458)
[»] chr5 (1 HSPs)
chr5 (37-79)||(16989768-16989810)
[»] chr2 (2 HSPs)
chr2 (37-79)||(20482603-20482645)
chr2 (37-79)||(28018542-28018584)


Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 33110417 - 33110781
Alignment:
Q  1 acacataagtggcatctccaaaaactggatgccaataatgctttccttcatggagaccttgatgaagatgtgtacatgaagcttcatcctggtgttcatt 100  Q
    |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33110417 acacataattggcatctccaaaaactggatgtcaataatgctttccttcatggagaccttgatgaagatgtgtacatgaagcttcatcctggtgttcatt 33110516  T
Q  101 cttccaaaccaaatcaagtttgtaaactactttaaacctctttatggtttgaaataaggcaagctgcaatggctctccaaattatcctcnnnnnnnctat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||    
T  33110517 cttccaaaccaaatcaagtttgtaaactactttaaacctctttatggtttgaaataaggcaagctgcaatggctctccaaattatcctctttttttctat 33110616  T
Q  201 tggattcactcaatcccaatctgattattcattgttcactnnnnnnnncctctactctttcacaactctattggtatatgttgatgatgttattctcaca 300  Q
    ||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33110617 tggattcactcaatcccaatctgattattcattgttcactaaaaaaaacctctactctttcacaactctgttggtatatgttgatgatgttattctcaca 33110716  T
Q  301 tgaacatccatttcagatatccactctgttaaacttggtccttacttcttccgctcttcatctca 365  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  33110717 tgaacatccatttcagatatccactctgttaaacttggtccttacttctcccgctcttcatctca 33110781  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 23 - 128
Target Start/End: Complemental strand, 18551587 - 18551482
Alignment:
Q  23 aactggatgccaataatgctttccttcatggagaccttgatgaagatgtgtacatgaagcttcatcctggtgttcattcttccaaaccaaatcaagtttg 122  Q
    |||| |||| ||||||||||||||||||||| ||  |  | ||| ||||||||||| | |||| ||| |||||| | || ||||||||||||||||||||    
T  18551587 aacttgatgtcaataatgctttccttcatggtgaattgcaagaaaatgtgtacatgcaacttcctccaggtgttaaatcatccaaaccaaatcaagtttg 18551488  T
Q  123 taaact 128  Q
    ||||||    
T  18551487 taaact 18551482  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 33222002 - 33222186
Alignment:
Q  1 acacataagtggcatctccaaaaactggatgccaataatgctttccttcatggagaccttgatgaagatgtgtacatgaagcttcatcctggtgttcatt 100  Q
    |||||||| |||||||||||| || || ||| ||| ||||| ||  ||||||||||||||||| | |||||   ||||||||||| |||| |||||   |    
T  33222002 acacataattggcatctccaacaattgaatgtcaaaaatgcatttattcatggagaccttgataaggatgtaagcatgaagcttcctcctagtgtttcat 33222101  T
Q  101 cttccaaaccaaatcaagtttgtaaactactttaaacctctttatggtttgaaataaggcaagctgcaatggctctccaaattatc 186  Q
    ||| |||||| |||||||||| |||| | | | ||| ||||||| |||||||| |||| ||| |  |||||| | |||||||||||    
T  33222102 ctttcaaacctaatcaagtttctaaattgc-tcaaatctctttagggtttgaagtaagccaaccaccaatggttttccaaattatc 33222186  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 128
Target Start/End: Complemental strand, 9802820 - 9802725
Alignment:
Q  33 caataatgctttccttcatggagaccttgatgaagatgtgtacatgaagcttcatcctggtgttcattcttccaaaccaaatcaagtttgtaaact 128  Q
    |||||||||||| |||||||| ||| |  | ||| ||||||||||| | |||| ||| |||||| |  | |||||||||||||||||||| |||||    
T  9802820 caataatgcttttcttcatggcgacttgcaagaaaatgtgtacatgtaacttcctccaggtgttaaaacatccaaaccaaatcaagtttgcaaact 9802725  T

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Target: scaffold1416 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1416
Description:

Target: scaffold1416; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 218 - 176
Alignment:
Q  37 aatgctttccttcatggagaccttgatgaagatgtgtacatga 79  Q
    |||||||||||||||||||| ||| |||||||||| |||||||    
T  218 aatgctttccttcatggagagcttcatgaagatgtttacatga 176  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 6343513 - 6343555
Alignment:
Q  37 aatgctttccttcatggagaccttgatgaagatgtgtacatga 79  Q
    |||||||||||||||||||| ||| |||||||||| |||||||    
T  6343513 aatgctttccttcatggagagcttcatgaagatgtttacatga 6343555  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 37 - 85
Target Start/End: Complemental strand, 15514458 - 15514410
Alignment:
Q  37 aatgctttccttcatggagaccttgatgaagatgtgtacatgaagcttc 85  Q
    ||||||||||| |||||||||||||||||||| || || ||||| ||||    
T  15514458 aatgctttcctacatggagaccttgatgaagaagtatatatgaatcttc 15514410  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 16989810 - 16989768
Alignment:
Q  37 aatgctttccttcatggagaccttgatgaagatgtgtacatga 79  Q
    |||||||||||||||||||| ||| |||||||||| |||||||    
T  16989810 aatgctttccttcatggagagcttcatgaagatgtttacatga 16989768  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 20482645 - 20482603
Alignment:
Q  37 aatgctttccttcatggagaccttgatgaagatgtgtacatga 79  Q
    |||||||||||||||||||| ||| |||||||||| |||||||    
T  20482645 aatgctttccttcatggagagcttcatgaagatgtttacatga 20482603  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 28018542 - 28018584
Alignment:
Q  37 aatgctttccttcatggagaccttgatgaagatgtgtacatga 79  Q
    |||||||||||||||||||| ||| |||||||||| |||||||    
T  28018542 aatgctttccttcatggagagcttcatgaagatgtttacatga 28018584  T

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