View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8509_low_21 (Length: 336)
Name: NF8509_low_21
Description: NF8509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8509_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 31 - 317
Target Start/End: Original strand, 4318391 - 4318677
Alignment:
| Q |
31 |
taatactctttgtagtggtaatatattctatggtatattctctgtctcttttcttcatcatgatttaggtcatttagacgcgctataagattaatcattg |
130 |
Q |
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| T |
4318391 |
taatactcttggtagtggtaatctattctatggtatattctttgtctcttttcttcatcatgatttaggtcatttagacgcgctataagattaatcatta |
4318490 |
T |
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| Q |
131 |
agtaagttacacgacatttatcnnnnnnnnngttttgtttggattagaccgtcttcaaatgctacgtttggttttgcggttggtcattgtagtcgcacgt |
230 |
Q |
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|||||| ||||||||||||||| |||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4318491 |
agtaagctacacgacatttatcttatttttctttttgtttgggttggaccgtcttcaaatgctacgtttgattttgcggttggtcattgtagtcgcacgt |
4318590 |
T |
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| Q |
231 |
ttagtgttcgattttttgtgaaacaagaagctagtaatagtagttttacaaaatacgtgtgtctactaggctctttgatgtggaaac |
317 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4318591 |
ttagtgttccattttttgtgaaacaagaagctagtaatagtagttttacaaaagacgtgtgtctactaggctctttgatgtggaaac |
4318677 |
T |
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