View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8509_low_23 (Length: 318)

Name: NF8509_low_23
Description: NF8509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8509_low_23
NF8509_low_23
[»] chr3 (18 HSPs)
chr3 (42-308)||(55113332-55113598)
chr3 (19-79)||(30574025-30574085)
chr3 (34-84)||(5435724-5435774)
chr3 (26-77)||(1508711-1508762)
chr3 (26-77)||(31365402-31365453)
chr3 (19-77)||(402654-402712)
chr3 (27-100)||(36645969-36646042)
chr3 (26-74)||(12833886-12833934)
chr3 (26-77)||(7814265-7814316)
chr3 (44-91)||(46886835-46886881)
chr3 (20-74)||(28240228-28240282)
chr3 (26-91)||(19983656-19983720)
chr3 (50-91)||(37138247-37138288)
chr3 (40-85)||(40665320-40665365)
chr3 (19-87)||(20170819-20170887)
chr3 (35-91)||(34118841-34118897)
chr3 (19-91)||(35127484-35127556)
chr3 (18-90)||(41056928-41057000)
[»] chr4 (15 HSPs)
chr4 (19-91)||(2987074-2987146)
chr4 (28-91)||(26520351-26520414)
chr4 (18-81)||(55084586-55084649)
chr4 (34-81)||(44638305-44638352)
chr4 (42-81)||(45516652-45516691)
chr4 (47-85)||(22573065-22573103)
chr4 (27-85)||(30377813-30377871)
chr4 (19-84)||(17751235-17751300)
chr4 (21-85)||(30066881-30066945)
chr4 (21-77)||(35571947-35572003)
chr4 (28-91)||(679139-679202)
chr4 (26-77)||(1242401-1242452)
chr4 (27-85)||(26883886-26883944)
chr4 (27-91)||(50298416-50298480)
chr4 (59-91)||(54214900-54214932)
[»] chr5 (24 HSPs)
chr5 (19-86)||(39105355-39105421)
chr5 (19-77)||(9202861-9202919)
chr5 (34-91)||(8089684-8089741)
chr5 (19-85)||(10771991-10772057)
chr5 (19-91)||(42573892-42573964)
chr5 (20-80)||(42582808-42582868)
chr5 (36-91)||(5559615-5559670)
chr5 (26-73)||(42646548-42646595)
chr5 (34-91)||(5963410-5963467)
chr5 (19-73)||(1465132-1465186)
chr5 (19-105)||(6593171-6593257)
chr5 (40-90)||(11706742-11706792)
chr5 (19-85)||(14675013-14675079)
chr5 (45-90)||(8089024-8089069)
chr5 (28-77)||(12425470-12425519)
chr5 (34-91)||(34590356-34590413)
chr5 (34-77)||(3735629-3735672)
chr5 (34-77)||(32703576-32703619)
chr5 (29-91)||(2568536-2568598)
chr5 (19-77)||(19460499-19460557)
chr5 (21-91)||(28776861-28776930)
chr5 (34-84)||(30291153-30291203)
chr5 (26-71)||(25460987-25461032)
chr5 (47-91)||(30585567-30585611)
[»] chr6 (5 HSPs)
chr6 (19-79)||(264268-264328)
chr6 (26-77)||(34430605-34430656)
chr6 (21-90)||(35069439-35069507)
chr6 (20-84)||(31686558-31686622)
chr6 (48-80)||(415201-415233)
[»] chr8 (15 HSPs)
chr8 (20-85)||(2840250-2840315)
chr8 (20-85)||(2844937-2845002)
chr8 (20-81)||(2833444-2833505)
chr8 (34-91)||(37353376-37353433)
chr8 (21-73)||(40859833-40859885)
chr8 (21-85)||(43730668-43730732)
chr8 (26-77)||(10120656-10120707)
chr8 (50-85)||(24558743-24558778)
chr8 (26-77)||(40637423-40637474)
chr8 (19-72)||(10114394-10114447)
chr8 (38-85)||(31916472-31916519)
chr8 (34-77)||(41589582-41589625)
chr8 (50-85)||(44426531-44426566)
chr8 (47-85)||(26284937-26284975)
chr8 (26-91)||(14956425-14956489)
[»] chr1 (18 HSPs)
chr1 (26-91)||(33541838-33541902)
chr1 (19-77)||(5894276-5894334)
chr1 (21-91)||(47498958-47499027)
chr1 (26-76)||(3234153-3234203)
chr1 (26-83)||(11137787-11137844)
chr1 (26-91)||(51688581-51688645)
chr1 (41-81)||(31517872-31517912)
chr1 (34-73)||(24552478-24552517)
chr1 (36-91)||(27820470-27820524)
chr1 (26-77)||(31774167-31774218)
chr1 (44-91)||(48064194-48064241)
chr1 (27-77)||(27146369-27146419)
chr1 (20-78)||(38116299-38116357)
chr1 (50-91)||(4920894-4920935)
chr1 (21-85)||(10744199-10744263)
chr1 (39-83)||(14443404-14443448)
chr1 (27-91)||(37593790-37593854)
chr1 (41-85)||(37841889-37841933)
[»] chr7 (17 HSPs)
chr7 (26-76)||(21568758-21568808)
chr7 (34-75)||(44777110-44777151)
chr7 (34-91)||(48131234-48131290)
chr7 (21-85)||(7612350-7612414)
chr7 (26-77)||(33672977-33673028)
chr7 (21-80)||(47510007-47510066)
chr7 (19-105)||(33552934-33553019)
chr7 (31-77)||(33678681-33678727)
chr7 (19-85)||(42656406-42656472)
chr7 (19-77)||(47795856-47795914)
chr7 (41-90)||(20189153-20189201)
chr7 (58-91)||(32156894-32156927)
chr7 (26-91)||(32714307-32714372)
chr7 (19-79)||(21619304-21619364)
chr7 (57-85)||(30535470-30535498)
chr7 (29-77)||(38500051-38500099)
chr7 (57-85)||(38600430-38600458)
[»] chr2 (9 HSPs)
chr2 (26-77)||(5599180-5599231)
chr2 (26-72)||(31561883-31561929)
chr2 (28-85)||(9833046-9833103)
chr2 (21-77)||(36114318-36114374)
chr2 (27-91)||(39659639-39659702)
chr2 (19-85)||(8017326-8017392)
chr2 (26-76)||(41407191-41407241)
chr2 (40-77)||(12795681-12795718)
chr2 (41-77)||(1633691-1633727)


Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 42 - 308
Target Start/End: Complemental strand, 55113598 - 55113332
Alignment:
Q  42 ttatcatgataaacacttatgctataagctgcaaattaagttgtgtatcctagaagggtcatatttgtaattttgtatatcatttaactgtaagaaaccc 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55113598 ttatcatgataaacacttatgctataagctgcaaattaagttgtgtatcctagaagggtcatatttgtaattttgtatatcatttaactgtaagaaaccc 55113499  T
Q  142 tgtctgcaggattttgaggactactactgcaagcgctaagattttgctggaagatgtctacccctccaatagattgggctcatcacaatggtaatggaaa 241  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55113498 tgtctgcaggattttgaggacaactactgcaagcgctaagattttgctggaagatgtctacccctccaatagattgggctcatcacaatggtaatggaaa 55113399  T
Q  242 tttgacaagtcaagactcgctatgtgctgtcgcagaatttgaggaatttgatttctctaaagtatta 308  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55113398 tttgaaaagtcaagactcgctatgtgctgtcgcagaatttgaggaatttgatttctctaaagtatta 55113332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 30574025 - 30574085
Alignment:
Q  19 agaaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaatta 79  Q
    |||||| ||||||| |||||||||||||||||||||  |||||| ||||||||||||||||    
T  30574025 agaaatagcttatacataagcgcttatcatgataaatgcttatgatataagctgcaaatta 30574085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 5435774 - 5435724
Alignment:
Q  34 ataagcgcttatcatgataaacacttatgctataagctgcaaattaagttg 84  Q
    |||||| ||||||||||||| |||||||||||||||||| |||||||||||    
T  5435774 ataagcacttatcatgataagcacttatgctataagctgtaaattaagttg 5435724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 1508711 - 1508762
Alignment:
Q  26 gcttatatataagcgcttatcatgataaacacttatgctataagctgcaaat 77  Q
    ||||||| |||||||||||||||||||| ||||| ||||||||| |||||||    
T  1508711 gcttatacataagcgcttatcatgataagcacttgtgctataagttgcaaat 1508762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 31365402 - 31365453
Alignment:
Q  26 gcttatatataagcgcttatcatgataaacacttatgctataagctgcaaat 77  Q
    ||||||| ||||| |||||||||||||| ||||| |||||||||||||||||    
T  31365402 gcttatacataagtgcttatcatgataatcacttgtgctataagctgcaaat 31365453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 402654 - 402712
Alignment:
Q  19 agaaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaat 77  Q
    |||||| ||||||| |||||| ||||||||||||| ||||| |||||| ||||||||||    
T  402654 agaaatagcttatacataagcccttatcatgataagcacttgtgctatgagctgcaaat 402712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 100
Target Start/End: Original strand, 36645969 - 36646042
Alignment:
Q  27 cttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtgtatcctagaagggt 100  Q
    |||||||||||||  ||||||||||| || | |||||||| ||||||||||||||| || ||||| || |||||    
T  36645969 cttatatataagcaattatcatgatagacgcatatgctatgagctgcaaattaagtcgtttatccaagcagggt 36646042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 74
Target Start/End: Complemental strand, 12833934 - 12833886
Alignment:
Q  26 gcttatatataagcgcttatcatgataaacacttatgctataagctgca 74  Q
    ||||||| ||||| |||||| ||||||| ||||||||||||||||||||    
T  12833934 gcttataaataagtgcttattatgataagcacttatgctataagctgca 12833886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 7814265 - 7814316
Alignment:
Q  26 gcttatatataagcgcttatcatgataaacacttatgctataagctgcaaat 77  Q
    ||||||| ||||| |||||| ||||||| ||||||| |||||||||||||||    
T  7814265 gcttataaataagtgcttattatgataagcacttatactataagctgcaaat 7814316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 46886835 - 46886881
Alignment:
Q  44 atcatgataaacacttatgctataagctgcaaattaagttgtgtatcc 91  Q
    |||||||||| |||||||||||||||||||||| |||||||| |||||    
T  46886835 atcatgataagcacttatgctataagctgcaaa-taagttgtttatcc 46886881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 74
Target Start/End: Complemental strand, 28240282 - 28240228
Alignment:
Q  20 gaaatggcttatatataagcgcttatcatgataaacacttatgctataagctgca 74  Q
    ||||| ||||| |||||||| ||||||||||||| | ||| ||||||||||||||    
T  28240282 gaaatagcttaaatataagcacttatcatgataagcgcttgtgctataagctgca 28240228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 19983720 - 19983656
Alignment:
Q  26 gcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtgtatcc 91  Q
    ||||||| |||| |||||||||| ||||||| |||||||||||  |||||| |||||||| |||||    
T  19983720 gcttatacataaacgcttatcataataaacaattatgctataaattgcaaa-taagttgtttatcc 19983656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 37138288 - 37138247
Alignment:
Q  50 ataaacacttatgctataagctgcaaattaagttgtgtatcc 91  Q
    |||| ||||||||||||||||| ||||||||||||| |||||    
T  37138288 ataagcacttatgctataagcttcaaattaagttgtttatcc 37138247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 85
Target Start/End: Complemental strand, 40665365 - 40665320
Alignment:
Q  40 gcttatcatgataaacacttatgctataagctgcaaattaagttgt 85  Q
    ||||||||||||||  |||||||||||||||||||||  |||||||    
T  40665365 gcttatcatgataagaacttatgctataagctgcaaaaaaagttgt 40665320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 20170819 - 20170887
Alignment:
Q  19 agaaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtgt 87  Q
    |||||| ||||||  ||||| | ||||||||||||| |||||||||  ||  |||||||||||||||||    
T  20170819 agaaatagcttattcataagtgtttatcatgataaagacttatgcttgaaattgcaaattaagttgtgt 20170887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 91
Target Start/End: Complemental strand, 34118897 - 34118841
Alignment:
Q  35 taagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtgtatcc 91  Q
    |||| |||||||||||| ||| ||||||||||||| || || ||||||||| |||||    
T  34118897 taagagcttatcatgatcaacgcttatgctataagttgtaatttaagttgtttatcc 34118841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 35127484 - 35127556
Alignment:
Q  19 agaaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtgtatcc 91  Q
    |||||| || |||| |||||| |||||||||||||   |||||| |||||||||||||| ||| ||| |||||    
T  35127484 agaaatagcctatacataagcacttatcatgataagagcttatggtataagctgcaaatgaagctgtttatcc 35127556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 41057000 - 41056928
Alignment:
Q  18 aagaaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtgtatc 90  Q
    ||||||| |||||||  |||||  |||||||||||||| ||||| || |||||| ||||| ||||||| ||||    
T  41057000 aagaaatagcttatacttaagcaattatcatgataaacccttatactttaagctacaaatgaagttgtttatc 41056928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 2987146 - 2987074
Alignment:
Q  19 agaaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtgtatcc 91  Q
    |||||| ||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| |||| |||||    
T  2987146 agaaatagcttataaataagtgcttatcatgataaacacttatgttataagctgcaaattaacttgtttatcc 2987074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 28 - 91
Target Start/End: Original strand, 26520351 - 26520414
Alignment:
Q  28 ttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtgtatcc 91  Q
    ||||| ||||| |||||||||||||||||||||||||| |||| |||||||||||||| |||||    
T  26520351 ttatacataagtgcttatcatgataaacacttatgctagaagcagcaaattaagttgtttatcc 26520414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 55084586 - 55084649
Alignment:
Q  18 aagaaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaag 81  Q
    ||||||| ||||||  |||||||||||||||||||| ||||||||||||||| | |||||||||    
T  55084586 aagaaatagcttatgcataagcgcttatcatgataatcacttatgctataagtttcaaattaag 55084649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 81
Target Start/End: Original strand, 44638305 - 44638352
Alignment:
Q  34 ataagcgcttatcatgataaacacttatgctataagctgcaaattaag 81  Q
    ||||| ||||||||||||||||| | ||||||||||||||||||||||    
T  44638305 ataagtgcttatcatgataaacagtcatgctataagctgcaaattaag 44638352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 42 - 81
Target Start/End: Complemental strand, 45516691 - 45516652
Alignment:
Q  42 ttatcatgataaacacttatgctataagctgcaaattaag 81  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  45516691 ttatcatgataaacatttatgctataagctgcaaattaag 45516652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 85
Target Start/End: Complemental strand, 22573103 - 22573065
Alignment:
Q  47 atgataaacacttatgctataagctgcaaattaagttgt 85  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  22573103 atgataaacacttatgttataagctgcaaattaagttgt 22573065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 30377813 - 30377871
Alignment:
Q  27 cttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgt 85  Q
    |||||| | ||| ||||||||||||||||| || |||||||||||||||||| ||||||    
T  30377813 cttatacacaagtgcttatcatgataaacatttgtgctataagctgcaaatttagttgt 30377871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 17751235 - 17751300
Alignment:
Q  19 agaaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttg 84  Q
    |||||| ||||||| ||||||||||||||| | ||   ||||||||||||||||||| ||||||||    
T  17751235 agaaatagcttataaataagcgcttatcattacaagtgcttatgctataagctgcaatttaagttg 17751300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 30066881 - 30066945
Alignment:
Q  21 aaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgt 85  Q
    |||| ||||||| | ||| ||||||||| |||| | |||||||||||||||||||||||| ||||    
T  30066881 aaatagcttatacacaagtgcttatcattataagcgcttatgctataagctgcaaattaaattgt 30066945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Original strand, 35571947 - 35572003
Alignment:
Q  21 aaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaat 77  Q
    |||| ||||||| ||||| |||| ||||||||| ||||| |||||||||||||||||    
T  35571947 aaatagcttatacataagtgcttgtcatgataaccacttgtgctataagctgcaaat 35572003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 679202 - 679139
Alignment:
Q  28 ttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtgtatcc 91  Q
    ||||| ||||||||||||||| |||| ||| | || |||||||| ||||||||||||| |||||    
T  679202 ttatacataagcgcttatcattataagcacatgtgttataagctacaaattaagttgtttatcc 679139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 1242401 - 1242452
Alignment:
Q  26 gcttatatataagcgcttatcatgataaacacttatgctataagctgcaaat 77  Q
    ||||||| ||||| |||||| ||||||| ||||||| |||||||||||||||    
T  1242401 gcttataaataagtgcttattatgataagcacttatactataagctgcaaat 1242452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 85
Target Start/End: Complemental strand, 26883944 - 26883886
Alignment:
Q  27 cttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgt 85  Q
    |||||| |||| | ||||||| ||||| | ||||||||||| |||||||||||||||||    
T  26883944 cttatacataatcacttatcaagataagcgcttatgctatatgctgcaaattaagttgt 26883886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 50298480 - 50298416
Alignment:
Q  27 cttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtgtatcc 91  Q
    |||||| ||||||  ||||||||||||    |||||||||||||| ||||||||||||| |||||    
T  50298480 cttatacataagcatttatcatgataagtgtttatgctataagcttcaaattaagttgtttatcc 50298416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 91
Target Start/End: Complemental strand, 54214932 - 54214900
Alignment:
Q  59 tatgctataagctgcaaattaagttgtgtatcc 91  Q
    ||||||||||||||||||||||||||| |||||    
T  54214932 tatgctataagctgcaaattaagttgtttatcc 54214900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 39105421 - 39105355
Alignment:
Q  19 agaaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtg 86  Q
    |||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||||    
T  39105421 agaaatagcttatacataagcgcttatcatgataagcacttatgctataagctgcaaa-taagttgtg 39105355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 9202861 - 9202919
Alignment:
Q  19 agaaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaat 77  Q
    |||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  9202861 agaaatagcttatatataagcacttatcatgataaacacttgtgctataagctgcaaat 9202919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 8089741 - 8089684
Alignment:
Q  34 ataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtgtatcc 91  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||||    
T  8089741 ataagcgcttatcatgataaacacttatgctatgagctacaaattaagttgtttatcc 8089684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 10771991 - 10772057
Alignment:
Q  19 agaaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgt 85  Q
    |||||| ||||||| ||| | | |||||||||||| |||||||||||||||||||||||||||||||    
T  10771991 agaaatagcttatacatatgtgtttatcatgataagcacttatgctataagctgcaaattaagttgt 10772057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 42573892 - 42573964
Alignment:
Q  19 agaaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtgtatcc 91  Q
    |||||| ||||||| |||||||||||||||||||| | || | |||||||||||||||||||| ||| |||||    
T  42573892 agaaatagcttatacataagcgcttatcatgataagcgctcaggctataagctgcaaattaagctgtttatcc 42573964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 42582868 - 42582808
Alignment:
Q  20 gaaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaa 80  Q
    ||||| ||||||| |||||||||||| ||||||||| ||||||||||||||||||| ||||    
T  42582868 gaaatagcttatacataagcgcttattatgataaacgcttatgctataagctgcaagttaa 42582808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 91
Target Start/End: Complemental strand, 5559670 - 5559615
Alignment:
Q  36 aagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtgtatcc 91  Q
    ||||||||||||||||||||| ||||  |||||||||||||||||||||| |||||    
T  5559670 aagcgcttatcatgataaacatttattatataagctgcaaattaagttgtttatcc 5559615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 42646595 - 42646548
Alignment:
Q  26 gcttatatataagcgcttatcatgataaacacttatgctataagctgc 73  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||    
T  42646595 gcttatatataagcgcttatcatgataagcacttgtgctataagctgc 42646548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 5963410 - 5963467
Alignment:
Q  34 ataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtgtatcc 91  Q
    |||||||||||||||||||||  ||||||||||||  ||||||||||||||| |||||    
T  5963410 ataagcgcttatcatgataaatgcttatgctataaattgcaaattaagttgtttatcc 5963467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 1465132 - 1465186
Alignment:
Q  19 agaaatggcttatatataagcgcttatcatgataaacacttatgctataagctgc 73  Q
    |||||| ||||||| ||||||||||||| |||||| |||||||||||||| ||||    
T  1465132 agaaatagcttatacataagcgcttatcttgataagcacttatgctataaactgc 1465186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 6593257 - 6593171
Alignment:
Q  19 agaaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtgtatcctagaagggtcatat 105  Q
    |||||| | ||||| |||||||| ||||| ||||||   ||||||||||||||| |||||||||||| ||||| |  ||||||||||    
T  6593257 agaaattgtttatacataagcgcgtatcaagataaatgattatgctataagctgtaaattaagttgtttatccaaacagggtcatat 6593171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 11706792 - 11706742
Alignment:
Q  40 gcttatcatgataaacacttatgctataagctgcaaattaagttgtgtatc 90  Q
    ||||||||||||| || ||| ||||||||||||||||||||||||| ||||    
T  11706792 gcttatcatgatagacgcttttgctataagctgcaaattaagttgtttatc 11706742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 14675013 - 14675079
Alignment:
Q  19 agaaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgt 85  Q
    |||||| |||| || |||||| |||||||||||||  | |||||| |||||||||||||||||||||    
T  14675013 agaaatagcttctacataagcacttatcatgataactatttatgccataagctgcaaattaagttgt 14675079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 45 - 90
Target Start/End: Complemental strand, 8089069 - 8089024
Alignment:
Q  45 tcatgataaacacttatgctataagctgcaaattaagttgtgtatc 90  Q
    |||||| ||||||||| |||||||||||||||||||||||| ||||    
T  8089069 tcatgaaaaacacttacgctataagctgcaaattaagttgtttatc 8089024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 12425519 - 12425470
Alignment:
Q  28 ttatatataagcgcttatcatgataaacacttatgctataagctgcaaat 77  Q
    ||||| ||||||| |||||||||||||||||| | |||||||||||||||    
T  12425519 ttatacataagcgtttatcatgataaacacttgtactataagctgcaaat 12425470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 34590356 - 34590413
Alignment:
Q  34 ataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtgtatcc 91  Q
    ||||| ||||||||||||||| |||||| |||||||||||||| ||||| || |||||    
T  34590356 ataagtgcttatcatgataaatacttatcctataagctgcaaaataagtcgtttatcc 34590413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 3735629 - 3735672
Alignment:
Q  34 ataagcgcttatcatgataaacacttatgctataagctgcaaat 77  Q
    |||||||||||||||||||| | ||| |||||||||||||||||    
T  3735629 ataagcgcttatcatgataatctcttgtgctataagctgcaaat 3735672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 77
Target Start/End: Original strand, 32703576 - 32703619
Alignment:
Q  34 ataagcgcttatcatgataaacacttatgctataagctgcaaat 77  Q
    |||||||||||||||||||||  ||| |||||||||||||||||    
T  32703576 ataagcgcttatcatgataaatgcttgtgctataagctgcaaat 32703619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 91
Target Start/End: Complemental strand, 2568598 - 2568536
Alignment:
Q  29 tatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtgtatcc 91  Q
    |||| |||||| |||||||||||||  ||||| |||||||||||| || |||||||| |||||    
T  2568598 tatacataagcacttatcatgataagtacttaagctataagctgctaactaagttgtttatcc 2568536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 19460499 - 19460557
Alignment:
Q  19 agaaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaat 77  Q
    |||||| | ||||| ||||| |||||||||||||| || || |||||||||||||||||    
T  19460499 agaaatagtttatacataagtgcttatcatgataagcatttgtgctataagctgcaaat 19460557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 91
Target Start/End: Complemental strand, 28776930 - 28776861
Alignment:
Q  21 aaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtgtatcc 91  Q
    |||| ||||||| |||||| |||||||||||||   |||| ||||||||||||||| |||||||| |||||    
T  28776930 aaatagcttatacataagcacttatcatgataagtgcttaggctataagctgcaaa-taagttgtttatcc 28776861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 30291203 - 30291153
Alignment:
Q  34 ataagcgcttatcatgataaacacttatgctataagctgcaaattaagttg 84  Q
    ||||||| ||||||||||||    |||||||||||||||||||||||||||    
T  30291203 ataagcgtttatcatgataagtgtttatgctataagctgcaaattaagttg 30291153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 25461032 - 25460987
Alignment:
Q  26 gcttatatataagcgcttatcatgataaacacttatgctataagct 71  Q
    |||||||||||||| |||||||||||||   |||||||||||||||    
T  25461032 gcttatatataagctcttatcatgataagtgcttatgctataagct 25460987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 91
Target Start/End: Original strand, 30585567 - 30585611
Alignment:
Q  47 atgataaacacttatgctataagctgcaaattaagttgtgtatcc 91  Q
    ||||||||||||||| ||||||  ||||||||||||||| |||||    
T  30585567 atgataaacacttatactataatttgcaaattaagttgtttatcc 30585611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 264328 - 264268
Alignment:
Q  19 agaaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaatta 79  Q
    |||||| |||||||||||||| ||||||||||||| ||||| |||||||||||||||||||    
T  264328 agaaatagcttatatataagcacttatcatgataagcacttgtgctataagctgcaaatta 264268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 34430656 - 34430605
Alignment:
Q  26 gcttatatataagcgcttatcatgataaacacttatgctataagctgcaaat 77  Q
    ||||||| |||||||| ||||||||||| ||||| |||||||||||||||||    
T  34430656 gcttatacataagcgcctatcatgataagcacttgtgctataagctgcaaat 34430605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 90
Target Start/End: Complemental strand, 35069507 - 35069439
Alignment:
Q  21 aaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtgtatc 90  Q
    |||| ||||||  |||||| ||||||||||||||| ||| |||||||||||||||| |||||||| ||||    
T  35069507 aaatagcttatgcataagcacttatcatgataaacgcttgtgctataagctgcaaa-taagttgtttatc 35069439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 84
Target Start/End: Original strand, 31686558 - 31686622
Alignment:
Q  20 gaaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttg 84  Q
    ||||| ||||||| |||||| ||||||| ||||| | |||||||| || ||||||||||||||||    
T  31686558 gaaatagcttatacataagcacttatcacgataagcgcttatgctgtatgctgcaaattaagttg 31686622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 80
Target Start/End: Complemental strand, 415233 - 415201
Alignment:
Q  48 tgataaacacttatgctataagctgcaaattaa 80  Q
    |||||||||||||||||||||| ||||||||||    
T  415233 tgataaacacttatgctataagttgcaaattaa 415201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 2840315 - 2840250
Alignment:
Q  20 gaaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgt 85  Q
    ||||| ||||||  |||||| ||||||||||||| |||||||||||||||||||||| ||||||||    
T  2840315 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagttgt 2840250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 2845002 - 2844937
Alignment:
Q  20 gaaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgt 85  Q
    ||||| ||||||  |||||| ||||||||||||| |||||||||||||||||||||| ||||||||    
T  2845002 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataagttgt 2844937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 2833444 - 2833505
Alignment:
Q  20 gaaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaag 81  Q
    ||||| ||||||  |||||| ||||||||||||| |||||||||||||||||||||| ||||    
T  2833444 gaaatagcttattcataagcacttatcatgataagcacttatgctataagctgcaaaataag 2833505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 91
Target Start/End: Original strand, 37353376 - 37353433
Alignment:
Q  34 ataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtgtatcc 91  Q
    ||||||||||||||| |||| || |||||||||||||||||||| ||||||| |||||    
T  37353376 ataagcgcttatcatcataagcatttatgctataagctgcaaatcaagttgtttatcc 37353433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 40859833 - 40859885
Alignment:
Q  21 aaatggcttatatataagcgcttatcatgataaacacttatgctataagctgc 73  Q
    |||| ||||||| |||||||||||||||||||| ||||| |||||||||||||    
T  40859833 aaatagcttatacataagcgcttatcatgataagcacttgtgctataagctgc 40859885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 43730732 - 43730668
Alignment:
Q  21 aaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgt 85  Q
    |||| ||||||| |||||  |||||||||||||||  |||||||| |||||||||||||||||||    
T  43730732 aaatagcttatacataagtacttatcatgataaacttttatgctaaaagctgcaaattaagttgt 43730668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 10120707 - 10120656
Alignment:
Q  26 gcttatatataagcgcttatcatgataaacacttatgctataagctgcaaat 77  Q
    ||||||| |||||| |||||||||| |||| |||||||||||||||||||||    
T  10120707 gcttatagataagcacttatcatgagaaacgcttatgctataagctgcaaat 10120656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 85
Target Start/End: Complemental strand, 24558778 - 24558743
Alignment:
Q  50 ataaacacttatgctataagctgcaaattaagttgt 85  Q
    ||||||||||||||||||||||||||||||||||||    
T  24558778 ataaacacttatgctataagctgcaaattaagttgt 24558743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 40637423 - 40637474
Alignment:
Q  26 gcttatatataagcgcttatcatgataaacacttatgctataagctgcaaat 77  Q
    ||||||| ||||| |||||| ||||||| |||||||||||||||||||||||    
T  40637423 gcttataaataagtgcttattatgataagcacttatgctataagctgcaaat 40637474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 19 - 72
Target Start/End: Complemental strand, 10114447 - 10114394
Alignment:
Q  19 agaaatggcttatatataagcgcttatcatgataaacacttatgctataagctg 72  Q
    |||||| ||||||| |||||| |||||||| |||| ||||||||||||||||||    
T  10114447 agaaatagcttatacataagcacttatcatcataaccacttatgctataagctg 10114394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 31916519 - 31916472
Alignment:
Q  38 gcgcttatcatgataaacacttatgctataagctgcaaattaagttgt 85  Q
    |||||||||||||||| | ||||||| ||||||||||||| |||||||    
T  31916519 gcgcttatcatgataagcgcttatgccataagctgcaaatgaagttgt 31916472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 77
Target Start/End: Complemental strand, 41589625 - 41589582
Alignment:
Q  34 ataagcgcttatcatgataaacacttatgctataagctgcaaat 77  Q
    |||||||||||||||||||||  ||| |||||||||||||||||    
T  41589625 ataagcgcttatcatgataaatgcttgtgctataagctgcaaat 41589582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 85
Target Start/End: Original strand, 44426531 - 44426566
Alignment:
Q  50 ataaacacttatgctataagctgcaaattaagttgt 85  Q
    |||| |||||||||||||||||||||||||||||||    
T  44426531 ataagcacttatgctataagctgcaaattaagttgt 44426566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 85
Target Start/End: Original strand, 26284937 - 26284975
Alignment:
Q  47 atgataaacacttatgctataagctgcaaattaagttgt 85  Q
    |||||||||||||||||||||||| || |||||||||||    
T  26284937 atgataaacacttatgctataagcggctaattaagttgt 26284975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 14956425 - 14956489
Alignment:
Q  26 gcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtgtatcc 91  Q
    ||||||| ||||| |||||||||||||| |  || |||||||||||||||| |||||||| |||||    
T  14956425 gcttatacataagtgcttatcatgataagcgattgtgctataagctgcaaa-taagttgtttatcc 14956489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 26 - 91
Target Start/End: Original strand, 33541838 - 33541902
Alignment:
Q  26 gcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtgtatcc 91  Q
    ||||||| |||||||||||||||||||||||||| |||||||| ||||||| |||||||| |||||    
T  33541838 gcttatacataagcgcttatcatgataaacacttgtgctataaactgcaaa-taagttgtttatcc 33541902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 5894276 - 5894334
Alignment:
Q  19 agaaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaat 77  Q
    |||||| ||||||| |||||||||||||||||||| ||||| ||||||||||| |||||    
T  5894276 agaaatagcttatacataagcgcttatcatgataagcacttgtgctataagcttcaaat 5894334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 47498958 - 47499027
Alignment:
Q  21 aaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtgtatcc 91  Q
    |||| ||||||| | |||||||||||||||||| ||||| |||||||||||||||| |||||||| |||||    
T  47498958 aaatagcttatacacaagcgcttatcatgataagcacttgtgctataagctgcaaa-taagttgtttatcc 47499027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 3234153 - 3234203
Alignment:
Q  26 gcttatatataagcgcttatcatgataaacacttatgctataagctgcaaa 76  Q
    |||||||||||||||||||||||||||| | ||| ||||||||| ||||||    
T  3234153 gcttatatataagcgcttatcatgataagcgcttgtgctataagttgcaaa 3234203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 83
Target Start/End: Complemental strand, 11137844 - 11137787
Alignment:
Q  26 gcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagtt 83  Q
    ||||||| ||||  |||||||||||||  |||||||||||||||||| ||||||||||    
T  11137844 gcttatacataattgcttatcatgatatgcacttatgctataagctgtaaattaagtt 11137787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 51688645 - 51688581
Alignment:
Q  26 gcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtgtatcc 91  Q
    |||||||||||| | ||||||||||||| ||||| | |||||||||||||| |||||||| |||||    
T  51688645 gcttatatataaacacttatcatgataagcacttgtactataagctgcaaa-taagttgtttatcc 51688581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 81
Target Start/End: Original strand, 31517872 - 31517912
Alignment:
Q  41 cttatcatgataaacacttatgctataagctgcaaattaag 81  Q
    ||||||||||||||  |||||||||||||||||||||||||    
T  31517872 cttatcatgataaatgcttatgctataagctgcaaattaag 31517912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 34 - 73
Target Start/End: Original strand, 24552478 - 24552517
Alignment:
Q  34 ataagcgcttatcatgataaacacttatgctataagctgc 73  Q
    |||||||||||||||||||| ||||| |||||||||||||    
T  24552478 ataagcgcttatcatgataatcacttgtgctataagctgc 24552517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 36 - 91
Target Start/End: Original strand, 27820470 - 27820524
Alignment:
Q  36 aagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtgtatcc 91  Q
    |||| ||||||||||||| | |||||||||||||||||||| |||||||| |||||    
T  27820470 aagcccttatcatgataagcgcttatgctataagctgcaaa-taagttgtttatcc 27820524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 31774167 - 31774218
Alignment:
Q  26 gcttatatataagcgcttatcatgataaacacttatgctataagctgcaaat 77  Q
    ||||||| ||||| |||||| ||||||| ||||||| |||||||||||||||    
T  31774167 gcttataaataagtgcttattatgataagcacttatactataagctgcaaat 31774218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 44 - 91
Target Start/End: Complemental strand, 48064241 - 48064194
Alignment:
Q  44 atcatgataaacacttatgctataagctgcaaattaagttgtgtatcc 91  Q
    ||||||||||   ||||||||||||||||||||||||||||| |||||    
T  48064241 atcatgataagggcttatgctataagctgcaaattaagttgtttatcc 48064194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 27146369 - 27146419
Alignment:
Q  27 cttatatataagcgcttatcatgataaacacttatgctataagctgcaaat 77  Q
    |||||| |||| ||||||||||||||   ||||||||||||||||||||||    
T  27146369 cttatacataaacgcttatcatgatatgtacttatgctataagctgcaaat 27146419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 38116299 - 38116357
Alignment:
Q  20 gaaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaatt 78  Q
    ||||| ||||||| |||||||||||||||||||| | | | | ||||||||||||||||    
T  38116299 gaaatagcttatacataagcgcttatcatgataagcgcatgtactataagctgcaaatt 38116357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 91
Target Start/End: Original strand, 4920894 - 4920935
Alignment:
Q  50 ataaacacttatgctataagctgcaaattaagttgtgtatcc 91  Q
    |||| ||||||||||||||||||||||||||| ||| |||||    
T  4920894 ataagcacttatgctataagctgcaaattaagctgtttatcc 4920935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 10744263 - 10744199
Alignment:
Q  21 aaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgt 85  Q
    |||| ||||||| || ||| ||| ||||||||| | ||||||||||||||||  |||||||||||    
T  10744263 aaatagcttatacattagcacttgtcatgataagcgcttatgctataagctgagaattaagttgt 10744199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 14443448 - 14443404
Alignment:
Q  39 cgcttatcatgataaacacttatgctataagctgcaaattaagtt 83  Q
    |||| ||||||||||  |||||||||||||||| |||||||||||    
T  14443448 cgctaatcatgataagtacttatgctataagcttcaaattaagtt 14443404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 37593790 - 37593854
Alignment:
Q  27 cttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtgtatcc 91  Q
    |||||| |||| | |||||| |||||| | ||| |||| |||||||||||||||||||| |||||    
T  37593790 cttatacataaacacttatcgtgataagcgcttttgctttaagctgcaaattaagttgtttatcc 37593854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 37841933 - 37841889
Alignment:
Q  41 cttatcatgataaacacttatgctataagctgcaaattaagttgt 85  Q
    |||||||||||||   |||||||||| ||||||||||||||||||    
T  37841933 cttatcatgataagtgcttatgctattagctgcaaattaagttgt 37841889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 21568758 - 21568808
Alignment:
Q  26 gcttatatataagcgcttatcatgataaacacttatgctataagctgcaaa 76  Q
    ||||||| ||||| |||||||||||||| ||||||||||||||||||||||    
T  21568758 gcttatacataagtgcttatcatgataagcacttatgctataagctgcaaa 21568808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 75
Target Start/End: Original strand, 44777110 - 44777151
Alignment:
Q  34 ataagcgcttatcatgataaacacttatgctataagctgcaa 75  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  44777110 ataagtgcttatcatgataaacacttatgctataagctgcaa 44777151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 48131290 - 48131234
Alignment:
Q  34 ataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtgtatcc 91  Q
    |||||||||||| ||||||| |||||||||| ||||||||||| ||||||||||||||    
T  48131290 ataagcgcttat-atgataagcacttatgctgtaagctgcaaaataagttgtgtatcc 48131234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 7612414 - 7612350
Alignment:
Q  21 aaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgt 85  Q
    |||| ||||||| ||| | ||||||||||||||   |||||||||||||||||||||||||||||    
T  7612414 aaatagcttatacatatgagcttatcatgataagtgcttatgctataagctgcaaattaagttgt 7612350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 33673028 - 33672977
Alignment:
Q  26 gcttatatataagcgcttatcatgataaacacttatgctataagctgcaaat 77  Q
    ||||||| ||||||||||||||| ||||| |||| |||||||||||||||||    
T  33673028 gcttatacataagcgcttatcataataaatacttgtgctataagctgcaaat 33672977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 47510066 - 47510007
Alignment:
Q  21 aaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaa 80  Q
    |||| |||||||||||||| ||||||||||||| |||||| || ||||||| ||||||||    
T  47510066 aaattgcttatatataagcccttatcatgataagcacttaggcaataagctacaaattaa 47510007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 33552934 - 33553019
Alignment:
Q  19 agaaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtgtatcctagaagggtcatat 105  Q
    |||||| ||||||| |||||||||||||||| |||   ||| ||| |||||||||||| |||||||| ||||| | ||||| |||||    
T  33552934 agaaatagcttatacataagcgcttatcatggtaagtgcttgtgcaataagctgcaaa-taagttgtttatccaataagggacatat 33553019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 33678727 - 33678681
Alignment:
Q  31 tatataagcgcttatcatgataaacacttatgctataagctgcaaat 77  Q
    ||||||||| ||||||||||||| ||||| ||||||||| |||||||    
T  33678727 tatataagctcttatcatgataagcacttgtgctataagatgcaaat 33678681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 42656472 - 42656406
Alignment:
Q  19 agaaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgt 85  Q
    |||||| ||||||||||||| ||||||  |||||| | ||||||||||||||| | ||| |||||||    
T  42656472 agaaatagcttatatataagtgcttattttgataagcgcttatgctataagctactaatgaagttgt 42656406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 47795914 - 47795856
Alignment:
Q  19 agaaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaat 77  Q
    |||||| | ||||| ||||| | |||||||||||| | |||||||||||||||||||||    
T  47795914 agaaataggttatacataagtggttatcatgataagcgcttatgctataagctgcaaat 47795856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 20189153 - 20189201
Alignment:
Q  41 cttatcatgataaacacttatgctataagctgcaaattaagttgtgtatc 90  Q
    ||||||||||||| ||||||||  |||||||||||| |||||||||||||    
T  20189153 cttatcatgataagcacttatgtcataagctgcaaa-taagttgtgtatc 20189201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 91
Target Start/End: Complemental strand, 32156927 - 32156894
Alignment:
Q  58 ttatgctataagctgcaaattaagttgtgtatcc 91  Q
    |||||||||||||||||||||||||||| |||||    
T  32156927 ttatgctataagctgcaaattaagttgtttatcc 32156894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 26 - 91
Target Start/End: Complemental strand, 32714372 - 32714307
Alignment:
Q  26 gcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtgtatcc 91  Q
    ||||||| |||||||||||||||||||||   ||||  |||||| || |||||||||||| |||||    
T  32714372 gcttatacataagcgcttatcatgataaatgtttatattataagttgtaaattaagttgtttatcc 32714307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 21619364 - 21619304
Alignment:
Q  19 agaaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaatta 79  Q
    |||||| ||||| | ||||| ||||||||||||||   ||| |||||||||||||||||||    
T  21619364 agaaatagcttagagataagtgcttatcatgataagtgcttgtgctataagctgcaaatta 21619304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 85
Target Start/End: Complemental strand, 30535498 - 30535470
Alignment:
Q  57 cttatgctataagctgcaaattaagttgt 85  Q
    |||||||||||||||||||||||||||||    
T  30535498 cttatgctataagctgcaaattaagttgt 30535470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 38500051 - 38500099
Alignment:
Q  29 tatatataagcgcttatcatgataaacacttatgctataagctgcaaat 77  Q
    |||| |||||||||||||||||||| | ||| |||||||| ||||||||    
T  38500051 tatacataagcgcttatcatgataagcgcttgtgctataaactgcaaat 38500099  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 85
Target Start/End: Original strand, 38600430 - 38600458
Alignment:
Q  57 cttatgctataagctgcaaattaagttgt 85  Q
    |||||||||||||||||||||||||||||    
T  38600430 cttatgctataagctgcaaattaagttgt 38600458  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 5599180 - 5599231
Alignment:
Q  26 gcttatatataagcgcttatcatgataaacacttatgctataagctgcaaat 77  Q
    ||||||| ||||| |||||| ||||||| |||||||||||||||||||||||    
T  5599180 gcttataaataagtgcttattatgataagcacttatgctataagctgcaaat 5599231  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 26 - 72
Target Start/End: Original strand, 31561883 - 31561929
Alignment:
Q  26 gcttatatataagcgcttatcatgataaacacttatgctataagctg 72  Q
    |||||||| ||||||||||||||||||||| ||| ||||||||||||    
T  31561883 gcttatatgtaagcgcttatcatgataaacgcttgtgctataagctg 31561929  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 9833103 - 9833046
Alignment:
Q  28 ttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgt 85  Q
    ||||| ||||| | |||||||||||||  |||||||||||||||| ||||||||||||    
T  9833103 ttatacataagtgtttatcatgataaatgcttatgctataagctgtaaattaagttgt 9833046  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 36114374 - 36114318
Alignment:
Q  21 aaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaat 77  Q
    |||| ||| |||||||||| ||||||||||||||||| | | |||||||||||||||    
T  36114374 aaatagctaatatataagcacttatcatgataaacacgtgtactataagctgcaaat 36114318  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 39659639 - 39659702
Alignment:
Q  27 cttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgtgtatcc 91  Q
    |||||| |||||||||||||||||||| || || |||| ||||||||||| |||||||| |||||    
T  39659639 cttatacataagcgcttatcatgataagcatttgtgctctaagctgcaaa-taagttgtttatcc 39659702  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 8017392 - 8017326
Alignment:
Q  19 agaaatggcttatatataagcgcttatcatgataaacacttatgctataagctgcaaattaagttgt 85  Q
    |||||| ||| ||| |||||||  |||||||||||||||||||||| ||||||| | | ||||||||    
T  8017392 agaaatagctgatacataagcgtgtatcatgataaacacttatgctttaagctgaacaataagttgt 8017326  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 41407241 - 41407191
Alignment:
Q  26 gcttatatataagcgcttatcatgataaacacttatgctataagctgcaaa 76  Q
    ||||||| ||||| |||||||||||||| | ||| ||||||||||||||||    
T  41407241 gcttatacataagtgcttatcatgataagcgcttgtgctataagctgcaaa 41407191  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 12795718 - 12795681
Alignment:
Q  40 gcttatcatgataaacacttatgctataagctgcaaat 77  Q
    |||||||||||||| |||||||||||||| ||||||||    
T  12795718 gcttatcatgataagcacttatgctataaactgcaaat 12795681  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 1633691 - 1633727
Alignment:
Q  41 cttatcatgataaacacttatgctataagctgcaaat 77  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  1633691 cttatcatgataagcacttctgctataagctgcaaat 1633727  T

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