View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8509_low_24 (Length: 313)
Name: NF8509_low_24
Description: NF8509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8509_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 286
Target Start/End: Complemental strand, 44879973 - 44879705
Alignment:
| Q |
18 |
ggtgtagtcattcgagctgaagaattttaatcctgaaaatgaagtgagcagcatcagacagggtgagaaaatgcaaagaacagagagtgaaatggttata |
117 |
Q |
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| T |
44879973 |
ggtgtagtcattcgagctgaagaattttaatcctgaaaatgaagtgagcagcatcagacagggtgagaaaatgcaaagaacagagagtgaaatggttaaa |
44879874 |
T |
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| Q |
118 |
ttcttacctaaggatgagccgaacatcacaaaacacaacatatagatcgctgataatgcaagaaaataaccatatgtaatcaaccaatatggcccgtcac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44879873 |
ttcttacctaaggatgagccgaacatcacaaaacacaacatatagatcgctgataatgcaagaaaataaccatatgtaatcaaccaatatggcccgtcac |
44879774 |
T |
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| Q |
218 |
caagaccatgcattttcatcatcattcttaatttttgctgcttctcataaaccagtgatgtcagaataa |
286 |
Q |
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| T |
44879773 |
caagaccatgcattttcatcatgattcttaatttttgttgcttctcataaaccagtgatgtcagaataa |
44879705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 20 - 286
Target Start/End: Complemental strand, 44862181 - 44861915
Alignment:
| Q |
20 |
tgtagtcattcgagctgaagaattttaatcctgaaaatgaagtgagcagcatcagacagggtgagaaaatgcaaagaacagagagtgaaatggttatatt |
119 |
Q |
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| T |
44862181 |
tgtagtcattcaaggtgaagaattttaatcctgaaaaggaaatcagcagcattagacagaacgagaaaatgccaagaacagagaatgaaatagttatatt |
44862082 |
T |
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| Q |
120 |
cttacctaaggatgagccgaacatcacaaaacacaacatatagatcgctgataatgcaagaaaataaccatatgtaatcaaccaatatggcccgtcacca |
219 |
Q |
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| T |
44862081 |
cttacctaagactgagccgaatatcacgaaacacaatatgtagatcacagataaggcaagaaaatatccatatgaaatcaaccaatatggcccgtcacca |
44861982 |
T |
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| Q |
220 |
agaccatgcattttcatcatcattcttaatttttgctgcttctcataaaccagtgatgtcagaataa |
286 |
Q |
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| T |
44861981 |
agaccatgcattttcatcatgattcttaatttttgttgcttctcataaaccagtgatgtcagaataa |
44861915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 20 - 280
Target Start/End: Complemental strand, 44836550 - 44836290
Alignment:
| Q |
20 |
tgtagtcattcgagctgaagaattttaatcctgaaaatgaagtgagcagcatcagacagggtgagaaaatgcaaagaacagagagtgaaatggttatatt |
119 |
Q |
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| T |
44836550 |
tgtagtcattcaaggtgaagaattttaatcctgaaaatgatgtcggcagcattagacagagtgggagaatgccaagaatagagagtcaaataattttatt |
44836451 |
T |
|
| Q |
120 |
cttacctaaggatgagccgaacatcacaaaacacaacatatagatcgctgataatgcaagaaaataaccatatgtaatcaaccaatatggcccgtcacca |
219 |
Q |
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|||||| ||| ||||||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||| |
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| T |
44836450 |
cttacccaagactgagccgaatatcacaaaacacaacatgtatatcgctgataaggcaagaaaataaccatatgtaatcatccaatatggcccatcacca |
44836351 |
T |
|
| Q |
220 |
agaccatgcattttcatcatcattcttaatttttgctgcttctcataaaccagtgatgtca |
280 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| |
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| T |
44836350 |
agaccatgcattttcatcatgattcttaatttttgttgcttctcataaaccagtgatgtca |
44836290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 286
Target Start/End: Complemental strand, 44848519 - 44848255
Alignment:
| Q |
20 |
tgtagtcattcgagctgaagaattttaatcctgaaaatgaagtgagcagcatcagacagggtgagaaaatgcaaagaacagagagtgaaatggttatatt |
119 |
Q |
| |
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||||||||||| || |||||||||||||||||||||||||||| ||||| ||||| || || |||||||| |||||| ||| | ||||||||||||| |
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| T |
44848519 |
tgtagtcattcaaggtgaagaattttaatcctgaaaatgaagtcagcagtgtcagaaagaatgggaaaatgccaagaacggag--ttaaatggttatatt |
44848422 |
T |
|
| Q |
120 |
cttacctaaggatgagccgaacatcacaaaacacaacatatagatcgctgataatgcaagaaaataaccatatgtaatcaaccaatatggcccgtcacca |
219 |
Q |
| |
|
|||||| ||| |||||| ||| |||||||||| || || |||||| | ||||| ||||||||||| || |||| ||||| ||||||||||||||||||| |
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| T |
44848421 |
cttaccaaagactgagccaaacgtcacaaaacataaaatgtagatcaccgataaggcaagaaaatagccgtatgaaatcatccaatatggcccgtcacca |
44848322 |
T |
|
| Q |
220 |
agaccatgcattttcatcatcattcttaatttttgctgcttctcataaaccagtgatgtcagaataa |
286 |
Q |
| |
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|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
44848321 |
agaccatgcattttcatcatgattcttaatttttgttgcttctcataaaccagtgatgtcagaataa |
44848255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 22 - 281
Target Start/End: Complemental strand, 44897492 - 44897234
Alignment:
| Q |
22 |
tagtcattcgagctgaagaattttaatcctgaaaatgaagtgagcagcatcagacagggtgagaaaatgcaaagaacagagagtgaaatggttatattct |
121 |
Q |
| |
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||||||||| || |||||||||| ||||||||||||||||| |||||||| |||||| ||||||||| ||||||| ||| |||||||||||||| |
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| T |
44897492 |
tagtcattcaaggtgaagaatttcaatcctgaaaatgaagtcagcagcattagacagaacaagaaaatgccaagaacaactagt-taatggttatattct |
44897394 |
T |
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| Q |
122 |
tacctaaggatgagccgaacatcacaaaacacaacatatagatcgctgataatgcaagaaaataaccatatgtaatcaaccaatatggcccgtcaccaag |
221 |
Q |
| |
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|||||| | |||||| || |||||||| |||||||| |||||| ||||||| ||||| ||||||||||||||||||| ||||||||| || |||||||| |
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| T |
44897393 |
tacctaggactgagccaaatatcacaaagcacaacatgtagatcactgataaggcaaggaaataaccatatgtaatcatccaatatggtccatcaccaag |
44897294 |
T |
|
| Q |
222 |
accatgcattttcatcatcattcttaatttttgctgcttctcataaaccagtgatgtcag |
281 |
Q |
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|||||||||||||||||| ||||| |||||||| ||||||||||||| |||||||||||| |
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| T |
44897293 |
accatgcattttcatcatgattctcaatttttgttgcttctcataaatcagtgatgtcag |
44897234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 148 - 278
Target Start/End: Original strand, 12927449 - 12927579
Alignment:
| Q |
148 |
aaacacaacatatagatcgctgataatgcaagaaaataaccatatgtaatcaaccaatatggcccgtcaccaagaccatgcattttcatcatcattctta |
247 |
Q |
| |
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||||||||||| ||||| ||||| ||||||||||||| || | ||| | |||||||||||| ||||| |||||||||||||||||||| ||||| | |
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| T |
12927449 |
aaacacaacatgtagataattgatatggcaagaaaataactgtaagaaataatccaatatggcccatcaccgagaccatgcattttcatcatgattctca |
12927548 |
T |
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| Q |
248 |
atttttgctgcttctcataaaccagtgatgt |
278 |
Q |
| |
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| T |
12927549 |
aattttgttgcttctcgtaaactaatgatgt |
12927579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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