View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8509_low_25 (Length: 295)
Name: NF8509_low_25
Description: NF8509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8509_low_25 |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 44 - 279
Target Start/End: Complemental strand, 1429101 - 1428866
Alignment:
| Q |
44 |
aggggattggtttcaggttttgaacccatacccaaattcaccaaagattaaaagcctcccaacgattatggcggaaagggttacaatcgcaacagcaaaa |
143 |
Q |
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| T |
1429101 |
aggggattggtttcaggttttgaacccatacccaaattcaccaaagattaaaagcctcccaacgattatggcgcaaagggttacaatcgcaacagcaaaa |
1429002 |
T |
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| Q |
144 |
tcatgatctacgctaaagtccttctctttttcaacatcattttaatgctttgtctccatatctatgctcgttggtatcttctccaatctcgccaccagag |
243 |
Q |
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| T |
1429001 |
tcatgatctacgctaaagtccttctctttttcaacatcattttaatgctttgtctccatatttatgctcgttggtatcttctccaatctcgccaccggag |
1428902 |
T |
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| Q |
244 |
aaaccgtatccgtcatcgtgctcagctggtcttctt |
279 |
Q |
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| T |
1428901 |
aaaccgtatccgtcatcgtgctcagctggtcttctt |
1428866 |
T |
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Back To:
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Target: chr2 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 64 - 279
Target Start/End: Complemental strand, 13999332 - 13999117
Alignment:
| Q |
64 |
tgaacccatacccaaattcaccaaagattaaaagcctcccaacgattatggcggaaagggttacaatcgcaacagcaaaatcatgatctacgctaaagtc |
163 |
Q |
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| T |
13999332 |
tgaacccatacccaaattccccagagatcaaaaccctcccaacgattttgacccaaaaggttacaatctcaacggcaaaatcatgctctgtgccattatc |
13999233 |
T |
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| Q |
164 |
cttctctttttcaacatcattttaatgctttgtctccatatctatgctcgttggtatcttctccaatctcgccaccagagaaaccgtatccgtcatcgtg |
263 |
Q |
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| T |
13999232 |
cttctcttcttcatcatagtattaatgctttgtctccatatttacgctcgttggtaccttctccaatctcgtcgccggagaaaccgtatacgccgccgta |
13999133 |
T |
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| Q |
264 |
ctcagctggtcttctt |
279 |
Q |
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| T |
13999132 |
ctcagctggttttctt |
13999117 |
T |
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