View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8509_low_26 (Length: 285)
Name: NF8509_low_26
Description: NF8509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8509_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 51 - 267
Target Start/End: Original strand, 44187643 - 44187867
Alignment:
| Q |
51 |
tttttatcatcttgactttgatctcttagatcatataatttggagatttctc--------atgatatggcttgcaacaccttttgctgatctatgattct |
142 |
Q |
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| T |
44187643 |
tttttatcatcttggctttgatctcttagagcatataatttggagatttctccaactgacatggtatggcttgcagcaccttttgctgatctatgattct |
44187742 |
T |
|
| Q |
143 |
tttgatctttagtgttttgtctttcccattgccttgaagccatccatctgtcaagccaattccatccccaatggggattgtttggatccataattgtggc |
242 |
Q |
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||||||| ||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
44187743 |
tttgatccttagtgttttgtccttcccatggccttgaagccatccatctatcaagccaattccatctccaatggggattgtttggatccataattgtggc |
44187842 |
T |
|
| Q |
243 |
atctgtaggttttgaagagttcctc |
267 |
Q |
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||||||||||||||||||||||||| |
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| T |
44187843 |
atctgtaggttttgaagagttcctc |
44187867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 160; Significance: 3e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 51 - 267
Target Start/End: Complemental strand, 43096160 - 43095936
Alignment:
| Q |
51 |
tttttatcatcttgactttgatctcttagatcatataatttggagatttctc--------atgatatggcttgcaacaccttttgctgatctatgattct |
142 |
Q |
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||||| ||||||||| |||||||||||||| ||||||||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||| |
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| T |
43096160 |
tttttgtcatcttgattttgatctcttagagcatataatttggagatttctccaactgacatggtatggcttgcaacaccttttcctgatctatgattct |
43096061 |
T |
|
| Q |
143 |
tttgatctttagtgttttgtctttcccattgccttgaagccatccatctgtcaagccaattccatccccaatggggattgtttggatccataattgtggc |
242 |
Q |
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| T |
43096060 |
tctgatctttagtgttttgtccttcccatggccttgaagccatccatctgtcaagccaattccatccccaatggggattgtttggatccataattgtggc |
43095961 |
T |
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| Q |
243 |
atctgtaggttttgaagagttcctc |
267 |
Q |
| |
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|||||||| |||||||||||||||| |
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| T |
43095960 |
atctgtagcttttgaagagttcctc |
43095936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 51 - 267
Target Start/End: Original strand, 32726786 - 32726995
Alignment:
| Q |
51 |
tttttatcatcttgacttt-gatctcttagatcatataatttggagatttctc--------atgatatggcttgcaacaccttttgctgatctatgattc |
141 |
Q |
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|
||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||| |
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| T |
32726786 |
tttttatcatctttacttttgatctcttagagcatataatttggagatttctccaactgacatggtatggcttgcagcaccttttgctgatctatgattc |
32726885 |
T |
|
| Q |
142 |
ttttgatctttagtgttttgtctttcccattgccttgaagccatccatctgtcaagccaattccatccccaatggggattgtttggatccataattgtgg |
241 |
Q |
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|||||||| ||||||||||||| ||||||| |||||| |||||||||||||| |||||||||||||||||||||||||| ||| | |
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| T |
32726886 |
ttttgatccttagtgttttgtccttcccatggccttg----------------aagccaattccatctccaatggggattgtttggatccataactgtag |
32726969 |
T |
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| Q |
242 |
catctgtaggttttgaagagttcctc |
267 |
Q |
| |
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|||||||||||||||||| ||||||| |
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|
| T |
32726970 |
catctgtaggttttgaagggttcctc |
32726995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 235
Target Start/End: Original strand, 10768988 - 10769042
Alignment:
| Q |
181 |
gccatccatctgtcaagccaattccatccccaatggggattgtttggatccataa |
235 |
Q |
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||||||||||| || | |||| |||||||||| || ||||||||||||||||||| |
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| T |
10768988 |
gccatccatctctctaaccaactccatccccagtgaggattgtttggatccataa |
10769042 |
T |
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