View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8509_low_27 (Length: 276)
Name: NF8509_low_27
Description: NF8509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8509_low_27 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 2176115 - 2176390
Alignment:
| Q |
1 |
gtgcttcatagttgatatatatcttcttaccttgccattnnnnnnnnngccttacgaacctctgataaaaactttctaccacataactgaaaattatcta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2176115 |
gtgcttcatagttgatatatatcttcttaccttgccattaaaaaaaaagccttgcgaacctctgataaaaactttctaccacataactgaaaattatcta |
2176214 |
T |
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| Q |
101 |
tgtataaaacgctcaagaagggaagccttccctaaaaaataacatgcttttgtcaaaccaaatcattcagatcatcataaatagaaagttggccaattcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2176215 |
tgtataaaacgctcaagaagggaagccttccctaaaaaataacaggcttttgtcaaaccaaatcattcagatcatcataaatagaaagttggccaattcc |
2176314 |
T |
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| Q |
201 |
attgcccagttccaatgtcaagaaaatcaataattaactgattgactcgaataaattgttcttagaagtaaaacaa |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2176315 |
attgcccagttccaatgtcaagaaaatcaataattaactgattgactcgaataaattgttcttagaagtaaaacaa |
2176390 |
T |
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