View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8509_low_29 (Length: 275)
Name: NF8509_low_29
Description: NF8509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8509_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 24318437 - 24318190
Alignment:
| Q |
18 |
aaacctgacttcagccgatacctcatacatatgatgacactcgctggttagtgatatgagttcttcttcagataggtcggcatgttttttcaagagttct |
117 |
Q |
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| T |
24318437 |
aaacctgacttcagccaatacctcatacgtatgatgacactcgctggttagtgatatgagttcttcttcagataggtcgacatgttttttcaagagttct |
24318338 |
T |
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| Q |
118 |
tgaagaaacatgatgcagcatggg-tttgttcggccatttccttaataggcttgattaccttgtactgcttgagaacttgatgcaaagcatttaactctg |
216 |
Q |
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| T |
24318337 |
tgaagaaacatgatgcagcatgggctttgttcggccatttccttaataggcttgattaccttgtactgcttgagaacttgatgcaaagcatttaactctg |
24318238 |
T |
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| Q |
217 |
gcggagattcttgtctctttgcttgtcttttgtctgaggtgtctctct |
264 |
Q |
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| T |
24318237 |
gcggacattcttgtctctttgcttgtcttttgtctgaggtgtctctct |
24318190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 106 - 264
Target Start/End: Complemental strand, 24188239 - 24188081
Alignment:
| Q |
106 |
ttcaagagttcttgaagaaacatgatgcagcatggg-tttgttcggccatttccttaataggcttgattaccttgtactgcttgagaacttgatgcaaag |
204 |
Q |
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| T |
24188239 |
ttcaagagttcttgaagaaacatgatgcagcatgggctttgttcgatcgtttccttaatgggcatgattaccttgtactgtttgagaattttatgcaaag |
24188140 |
T |
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| Q |
205 |
catttaactctggcgg-agattcttgtctctttgcttgtcttttgtctgaggtgtctctct |
264 |
Q |
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| T |
24188139 |
catttaactctggcggcacattctcg-ct-tttgcttgtcttccttctgaggtgtctctct |
24188081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 64 - 192
Target Start/End: Original strand, 17430467 - 17430597
Alignment:
| Q |
64 |
gttagtgatatgagttcttcttcagataggtcggcatgttttttcaagagttcttgaagaaacatgatgcagcatgg-gtttgttcggccatttccttaa |
162 |
Q |
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|||||||||||||||||||| || ||||| ||||||| | ||||| ||||||||||||||| ||||||||||||| |||| |||||||||||||| | |
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| T |
17430467 |
gttagtgatatgagttcttcctcggatagatcggcattaatcttcaatagttcttgaagaaacttgatgcagcatggactttgatcggccatttccttga |
17430566 |
T |
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| Q |
163 |
taggcttgattaccttgtac-tgcttgagaa |
192 |
Q |
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| T |
17430567 |
tcggcatgattactctgtacatgcttgagaa |
17430597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 131
Target Start/End: Original strand, 16228227 - 16228336
Alignment:
| Q |
22 |
ctgacttcagccgatacctcatacatatgatgacactcgctggttagtgatatgagttcttcttcagataggtcggcatgttttttcaagagttcttgaa |
121 |
Q |
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||||||||||||| || | | ||||| | |||||| || || ||||||||||||||||||||||||||||| || |||| | ||||| ||||||||| |
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| T |
16228227 |
ctgacttcagccggtaacccgtacatgttatgacattctctagttagtgatatgagttcttcttcagatagatcagcattggtcttcaattgttcttgaa |
16228326 |
T |
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| Q |
122 |
gaaacatgat |
131 |
Q |
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||||| |||| |
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| T |
16228327 |
gaaacttgat |
16228336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 3399094 - 3398972
Alignment:
| Q |
18 |
aaacctgacttcagccgatacctcatacatatgatgacactcgctggttagtgatatgagttcttcttcagataggtcggcatgttttttcaagagttct |
117 |
Q |
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|||||||||| |||||| |||||| ||| | |||||| | ||||| | ||||| |||| |||||| |||||||| | |||| | | || ||||| ||| |
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| T |
3399094 |
aaacctgactacagccggtacctcgtacgtgtgatgaaattcgctagaaagtgagatgaattcttcctcagatagattagcatttgtctttaagagctct |
3398995 |
T |
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| Q |
118 |
tgaagaaacatgatgcagcatgg |
140 |
Q |
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| T |
3398994 |
tgaagaaacttgatgcagcatgg |
3398972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 24537175 - 24537223
Alignment:
| Q |
172 |
ttaccttgtactgcttgagaacttgatgcaaagcatttaactctggcgg |
220 |
Q |
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|||| |||||||||||||||| |||||||||| |||| ||||||||||| |
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| T |
24537175 |
ttactttgtactgcttgagaatttgatgcaaaacattgaactctggcgg |
24537223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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