View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8509_low_3 (Length: 514)
Name: NF8509_low_3
Description: NF8509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8509_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Original strand, 32223629 - 32224140
Alignment:
| Q |
1 |
ctctaaccaccaccatcaccaccacactaacccctatgcaattaaacttaactctggtttactcactccccattcacatacagccacattcatagtcata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32223629 |
ctctaaccaccaccatcaccaccacactaacccctatgcaattaaacttaactctggtttactcactccccattcacatacagccacattcatagtcata |
32223728 |
T |
|
| Q |
101 |
cacatcactaactatacctagcaattaagctacattatcattattcaaagaaaaagccaaaacaaaattaaaacaaccaatgaatccggtcataacattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32223729 |
cacatcactaactatacctagcaattaagctacattatcattattcaaagaaaaagccaaaacaaaattaaaacaaccaatgaatccggtcataacattt |
32223828 |
T |
|
| Q |
201 |
ggttcatattcacaagtatatgtatgtatgta-------ctatagttgagagactaataacttaacttacccattacccataacccatttacagctaaga |
293 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32223829 |
ggttcatattcacaagtatatgtatgtatgtatgtactactatagttgagagactaataacttaacttacccattacccataacccatttacagctaaga |
32223928 |
T |
|
| Q |
294 |
acttgtcatgnnnnnnntatcatgatggtaaaagtaaagggagaggattgaatacagattgcacaaatgtcataaaaatgtttcactgttttcacaaaaa |
393 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32223929 |
acttgtcatgaaaaaaatatcatgatggtaaaagtaaagggagaggattgaatacagattgcacaaatgtcataaaaatgtttcactgttttcacaaaaa |
32224028 |
T |
|
| Q |
394 |
tccttgttgttgctaaaaatagaacaaaaaacagaatcatccatccactactcaactttcacttcttccactcaactagttacaccattgatctgtttta |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32224029 |
tccttgttgttgctaaaaatagaacaaaaaacagaatcatccatccactactcaactttcacttcttccactcaactagttacaccattgatctgtttta |
32224128 |
T |
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| Q |
494 |
ttaacaccaaac |
505 |
Q |
| |
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|||||||||||| |
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| T |
32224129 |
ttaacaccaaac |
32224140 |
T |
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