View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8509_low_32 (Length: 257)
Name: NF8509_low_32
Description: NF8509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8509_low_32 |
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| [»] chr5 (4 HSPs) |
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| [»] scaffold0008 (1 HSPs) |
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| [»] scaffold0427 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 257
Target Start/End: Original strand, 24317897 - 24318140
Alignment:
| Q |
13 |
attattcttgaaagaaatttttctcgaaattgcaattattgtgtgaaataggtaaccatggaatcaaccaaaagcacacaatcaatggcaactaaaaagg |
112 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||| |
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| T |
24317897 |
attattcttgaaagaaatttttctcgaaaatgcaattattgtgtgaaa-aggtaaccatggaatcaaccaaaagcacataatcaatggcaacttaaaagg |
24317995 |
T |
|
| Q |
113 |
actccgaagaacataatctggagcaactgatcaatttactaaagaaggttaaggttactagttgttttgtggagaatctggagaaagagtcgtgatacct |
212 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24317996 |
actcagaagaacataatctggagcaactgatcaatttactaaagaaggttaaggttactagttgttttgtggagaatctggagaaagagtcgggatacct |
24318095 |
T |
|
| Q |
213 |
cgaatttcagcaagaagtagatctaaagcgacaatagttgttgaa |
257 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
24318096 |
cgaatttcagcaagaagtagatctaaagcgacaagagttgttgaa |
24318140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 32 - 254
Target Start/End: Original strand, 20550082 - 20550304
Alignment:
| Q |
32 |
tttctcgaaattgcaattattgtgtgaaataggtaaccatggaatcaaccaaaagcacacaatcaatggcaactaaaaaggactccgaagaacataatct |
131 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||| || |||||| | | || |||| |||||||||| ||| | |
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| T |
20550082 |
tttctcgaacttacaattattgtgtgaaataggtaaccatggactcaaccaaaagcacataaacaatggtaccaaatgaggagaccgaagaacaaaattt |
20550181 |
T |
|
| Q |
132 |
ggagcaactgatcaatttactaaagaaggttaaggttactagttgttttgtggagaatctggagaaagagtcgtgatacctcgaatttcagcaagaagta |
231 |
Q |
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|||||| || | || ||| ||||||| || ||||||||||||| |||| ||||||| |||||||||||| | ||||||| ||||| |||||||||| |
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| T |
20550182 |
cgagcaattggtaaagttattaaagaatgtgaaggttactagttcttttatggagaagctggagaaagagccaggataccttgaattccagcaagaagcg |
20550281 |
T |
|
| Q |
232 |
gatctaaagcgacaatagttgtt |
254 |
Q |
| |
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|| || ||||||||||||||||| |
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| T |
20550282 |
gagctgaagcgacaatagttgtt |
20550304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 257
Target Start/End: Original strand, 24187914 - 24188031
Alignment:
| Q |
140 |
tgatcaatttactaaagaaggttaaggttactagttgttttgtggagaatctggagaaagagtcgtgatacctcgaatttcagcaagaagtagatctaaa |
239 |
Q |
| |
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||||||| |||||||||||||| ||||||||||||| ||||||| |||| |||| |||||| || ||||||| |||||||||||||| | || || | |
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| T |
24187914 |
tgatcaaattactaaagaaggtgaaggttactagttcttttgtgaagaagttggaaaaagagccgggataccttgaatttcagcaagaggcaggactgca |
24188013 |
T |
|
| Q |
240 |
gcgacaatagttgttgaa |
257 |
Q |
| |
|
||||||| |||||||||| |
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|
| T |
24188014 |
gcgacaagagttgttgaa |
24188031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 24187816 - 24187873
Alignment:
| Q |
28 |
aatttttctcgaaattgcaattattgtgtgaaataggtaaccatggaatcaaccaaaa |
85 |
Q |
| |
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||||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||| |
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| T |
24187816 |
aatttttctcgaacttgaaattattgtgtgaaataggtaaccattgaatcaaccaaaa |
24187873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 31 - 252
Target Start/End: Complemental strand, 24537544 - 24537323
Alignment:
| Q |
31 |
ttttctcgaaattgcaattattgtgtgaaataggtaaccatggaatcaaccaaaagcacacaatcaatggcaactaaaaaggactccgaagaacataatc |
130 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| || || || |||| || || || |||| |
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| T |
24537544 |
ttttctcgaacctgcaattattgtgtgaaataggtaaccatggaatcaaccaaaaacacacgatcaatgacagctgaagaggagatggaggatcaaaatc |
24537445 |
T |
|
| Q |
131 |
tggagcaactgatcaatttactaaagaaggttaaggttactagttgttttgtggagaatctggagaaagagtcgtgatacctcgaatttcagcaagaagt |
230 |
Q |
| |
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| |||||| |||||| |||||| |||||||| ||||| ||| || |||||||||||| ||||||||||| | | ||||| ||||||||||||||||| |
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|
| T |
24537444 |
tagagcaagtgatcactttactcaagaaggtaaaggtgacttcttcttttgtggagaagttggagaaagagccagggtaccttgaatttcagcaagaagt |
24537345 |
T |
|
| Q |
231 |
agatctaaagcgacaatagttg |
252 |
Q |
| |
|
|||| ||||||||||| ||||| |
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| T |
24537344 |
agatttaaagcgacaagagttg |
24537323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 186
Target Start/End: Original strand, 26825908 - 26826066
Alignment:
| Q |
28 |
aatttttctcgaaattgcaattattgtgtgaaataggtaaccatggaatcaaccaaaagcacacaatcaatggcaactaaaaaggactccgaagaacata |
127 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||| | ||||| ||| || ||| |||||||||||| |
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|
| T |
26825908 |
aatttttttcgaagttgcaattattgtgtgaaataggtaacaatggaatcaaccaaaaggacaccaacaatgacaatcaatgaggcaaccgaagaacata |
26826007 |
T |
|
| Q |
128 |
atctggagcaactgatcaatttactaaagaaggttaaggttactagttgttttgtggag |
186 |
Q |
| |
|
|| || ||||| |||| |||||| |||||||||| ||||||||||||| |||||||||| |
|
|
| T |
26826008 |
atttgaagcaattgataaatttattaaagaaggtgaaggttactagttcttttgtggag |
26826066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 13 - 245
Target Start/End: Complemental strand, 233655 - 233423
Alignment:
| Q |
13 |
attattcttgaaagaaatttttctcgaaattgcaattattgtgtgaaataggtaaccatggaatcaaccaaaagcacacaatcaatggcaactaaaaagg |
112 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||| |||||||||||| |||||| | ||| |||||||||||| ||||| || ||| ||| |
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|
| T |
233655 |
attattcttgttagaaatttttctcgaacttgcaattattgtctgaaataggtaatcatggactgaactaaaagcacacaaacaatgacatttaatgagg |
233556 |
T |
|
| Q |
113 |
actccgaagaacataatctggagcaactgatcaatttactaaagaaggttaaggttactagttgttttgtggagaatctggagaaagagtcgtgatacct |
212 |
Q |
| |
|
| ||||||||| ||| |||||||| || | |||||| |||||||||| ||||||||||||| |||||||||||| |||| ||||||| | | ||||| |
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|
| T |
233555 |
agaacgaagaacaaaatttggagcaattggtaaatttattaaagaaggtgaaggttactagttcttttgtggagaagctggtgaaagagccagggtacct |
233456 |
T |
|
| Q |
213 |
cgaatttcagcaagaagtagatctaaagcgaca |
245 |
Q |
| |
|
|||||| || || |||||||| || |||||||| |
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|
| T |
233455 |
cgaattccatcatgaagtagagctgaagcgaca |
233423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 252
Target Start/End: Original strand, 16230699 - 16230937
Alignment:
| Q |
13 |
attattcttgaaagaaatttttctcgaaattgcaattattgtgtgaaataggtaaccatggaatcaaccaaaagcacacaatcaatggcaactaaaaagg |
112 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||| || | | |
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|
| T |
16230699 |
attattcttgtcagaaatttttctcgaacttgcaattattgtgtgaaataggtaaccatggactcaaccaaaagcacaaagacaatggcaacaaatgaag |
16230798 |
T |
|
| Q |
113 |
actccgaagaacataatctggagcaactgatcaatttactaaagaaggttaaggttactagttgttttgtggagaatctggagaaagagtcgtgatacct |
212 |
Q |
| |
|
| |||| |||| ||| ||||||| || | || |||||||||||||| ||||||||||||| |||||| || || |||||||||||| | |||||| | |
|
|
| T |
16230799 |
agatcgaaaaacaaaattgggagcaattggtaaagttactaaagaaggtgaaggttactagttcttttgtagaaaagctggagaaagagccatgatacat |
16230898 |
T |
|
| Q |
213 |
cgaatttcagcaagaagtagatctaaagcgacaatagttg |
252 |
Q |
| |
|
||| ||| ||||||||| || || ||||||||| ||||| |
|
|
| T |
16230899 |
tgaa-ttccgcaagaagttgagctgaagcgacaagagttg |
16230937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 42 - 257
Target Start/End: Original strand, 3398581 - 3398796
Alignment:
| Q |
42 |
ttgcaattattgtgtgaaataggtaaccatggaatcaaccaaaagcacacaatcaatggcaactaaaaaggactccgaagaacataatctggagcaactg |
141 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||| ||||||| |||| |||||||| || |||||| || |
|
|
| T |
3398581 |
ttgcaattattgtgtgaaataggtaatcatgtaatcaaccaaaagtacacaatcaatggaaactaaagaggaaatggaagaacagaactaggagcacttg |
3398680 |
T |
|
| Q |
142 |
atcaatttactaaagaaggttaaggttactagttgttttgtggagaatctggagaaagagtcgtgatacctcgaatttcagcaagaagtagatctaaagc |
241 |
Q |
| |
|
||| ||| | |||||||||||||| || | || | ||||||||| ||| |||||||| ||||||| | ||||||| ||||| | ||||||||| |
|
|
| T |
3398681 |
atctccttattcaagaaggttaaggtgacgaattcctatgtggagaagatgggaaaagagtcaggataccttgcatttcagaaagaaattcatctaaagc |
3398780 |
T |
|
| Q |
242 |
gacaatagttgttgaa |
257 |
Q |
| |
|
|| || |||||||||| |
|
|
| T |
3398781 |
gataagagttgttgaa |
3398796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 3387149 - 3387190
Alignment:
| Q |
31 |
ttttctcgaaattgcaattattgtgtgaaataggtaaccatg |
72 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||| |||| |
|
|
| T |
3387149 |
ttttctcgaatttgaaattattgtgtgaaataggtaatcatg |
3387190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0427 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0427
Description:
Target: scaffold0427; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 31 - 257
Target Start/End: Original strand, 4758 - 4984
Alignment:
| Q |
31 |
ttttctcgaaattgcaattattgtgtgaaataggtaaccatggaatcaaccaaaagcacacaatcaatggcaactaaaaaggactccgaagaacataatc |
130 |
Q |
| |
|
|||||||||| |||||| ||| |||||||||| || | ||||||||||||||||| ||||| ||||| | |||||| |||| |||||||| ||| |
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|
| T |
4758 |
ttttctcgaacttgcaactatggtgtgaaatatgttagcatggaatcaaccaaaaaggcacaagcaatgactactaaagaggagatggaagaacaaaatt |
4857 |
T |
|
| Q |
131 |
tggagcaactgatcaatttactaaagaaggttaaggttactagttgttttgtggagaatctggagaaagagtcgtgatacctcgaatttcagcaagaagt |
230 |
Q |
| |
|
|||||| ||||| | | | |||||||||||||| || | || |||||||||||| ||||| ||||||||| |||||||||||||| |||||||||| |
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|
| T |
4858 |
gggagcacttgatctcctcattcaagaaggttaaggtgacgacttcttttgtggagaagctggaaaaagagtcgggatacctcgaattttagcaagaagt |
4957 |
T |
|
| Q |
231 |
agatctaaagcgacaatagttgttgaa |
257 |
Q |
| |
|
|||| |||||||| || |||||||||| |
|
|
| T |
4958 |
agatataaagcgataagagttgttgaa |
4984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 24253091 - 24253144
Alignment:
| Q |
31 |
ttttctcgaaattgcaattattgtgtgaaataggtaaccatggaatcaaccaaa |
84 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
24253091 |
ttttctcgaacttgtgattattgtgtgaaataggtaatcatggaagcaaccaaa |
24253144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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