View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8509_low_33 (Length: 255)

Name: NF8509_low_33
Description: NF8509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8509_low_33
NF8509_low_33
[»] chr3 (5 HSPs)
chr3 (86-175)||(6131562-6131651)
chr3 (1-58)||(6131647-6131704)
chr3 (200-237)||(40247041-40247078)
chr3 (200-237)||(6131205-6131242)
chr3 (200-237)||(25418563-25418600)
[»] chr4 (2 HSPs)
chr4 (200-237)||(42786881-42786918)
chr4 (205-237)||(53276042-53276074)
[»] chr1 (2 HSPs)
chr1 (200-239)||(33025694-33025733)
chr1 (204-237)||(32588930-32588963)
[»] scaffold0113 (1 HSPs)
scaffold0113 (200-237)||(38867-38904)
[»] chr5 (2 HSPs)
chr5 (200-229)||(9689855-9689884)
chr5 (200-237)||(33656012-33656049)
[»] chr2 (2 HSPs)
chr2 (200-237)||(24776554-24776591)
chr2 (205-237)||(26601186-26601218)


Alignment Details
Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 86 - 175
Target Start/End: Complemental strand, 6131651 - 6131562
Alignment:
Q  86 taaatgagttttgagcttctaagcgtaacttagttggtagaaatttggggtgagagtaggccagatcgagtcggactttgcttaaatagg 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||    
T  6131651 taaatgagttttgagcttctaagcgtaacttagttggtagaaattaggggtgagagtagcccagatcgagtcggactttgcttaaatagg 6131562  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 6131704 - 6131647
Alignment:
Q  1 tgattaacgaaattttaaaataatctctaaaatttattaaaattttgatcacgtaaat 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6131704 tgattaacgaaattttaaaataatctctaaaatttattaaaattttgatcacgtaaat 6131647  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 40247041 - 40247078
Alignment:
Q  200 cttatgattgttttttcttttaagattttactgtctct 237  Q
    |||||||||||||||||||||||||||||||| |||||    
T  40247041 cttatgattgttttttcttttaagattttactatctct 40247078  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 6131242 - 6131205
Alignment:
Q  200 cttatgattgttttttcttttaagattttactgtctct 237  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  6131242 cttaggattgttttttcttttaagattttactatctct 6131205  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 25418563 - 25418600
Alignment:
Q  200 cttatgattgttttttcttttaagattttactgtctct 237  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  25418563 cttaggattgttttttcttttaagattttactatctct 25418600  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 42786881 - 42786918
Alignment:
Q  200 cttatgattgttttttcttttaagattttactgtctct 237  Q
    |||||||||||||||||||||||||||||||| |||||    
T  42786881 cttatgattgttttttcttttaagattttactatctct 42786918  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Original strand, 53276042 - 53276074
Alignment:
Q  205 gattgttttttcttttaagattttactgtctct 237  Q
    ||||||||||||||||||||||||||| |||||    
T  53276042 gattgttttttcttttaagattttactatctct 53276074  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 239
Target Start/End: Original strand, 33025694 - 33025733
Alignment:
Q  200 cttatgattgttttttcttttaagattttactgtctcttc 239  Q
    ||||||||||| |||||||||||||||||||| |||||||    
T  33025694 cttatgattgtgttttcttttaagattttactatctcttc 33025733  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 204 - 237
Target Start/End: Complemental strand, 32588963 - 32588930
Alignment:
Q  204 tgattgttttttcttttaagattttactgtctct 237  Q
    |||||||||||||||||||||||||||| |||||    
T  32588963 tgattgttttttcttttaagattttactctctct 32588930  T

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Target: scaffold0113 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 38904 - 38867
Alignment:
Q  200 cttatgattgttttttcttttaagattttactgtctct 237  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  38904 cttaggattgttttttcttttaagattttactatctct 38867  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 229
Target Start/End: Original strand, 9689855 - 9689884
Alignment:
Q  200 cttatgattgttttttcttttaagatttta 229  Q
    ||||||||||||||||||||||||||||||    
T  9689855 cttatgattgttttttcttttaagatttta 9689884  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 237
Target Start/End: Complemental strand, 33656049 - 33656012
Alignment:
Q  200 cttatgattgttttttcttttaagattttactgtctct 237  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  33656049 cttaggattgttttttcttttaagattttactatctct 33656012  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 237
Target Start/End: Original strand, 24776554 - 24776591
Alignment:
Q  200 cttatgattgttttttcttttaagattttactgtctct 237  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  24776554 cttaggattgttttttcttttaagattttactatctct 24776591  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 237
Target Start/End: Complemental strand, 26601218 - 26601186
Alignment:
Q  205 gattgttttttcttttaagattttactgtctct 237  Q
    ||||||||||||||||||||||||||| |||||    
T  26601218 gattgttttttcttttaagattttactatctct 26601186  T

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