View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8509_low_35 (Length: 251)
Name: NF8509_low_35
Description: NF8509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8509_low_35 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 33110415 - 33110165
Alignment:
| Q |
1 |
gcagctaaagcaagtaacaaacgcattagtgagttttgtaacaggattaaaagtatcaaaataattcactccttcttgttgagtgtaaccctctgctgcc |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33110415 |
gcagctaaagcaagtaacaagcgcattagtgagttttgtaacaggattaaaagtatcaaaataattcactccttcttgttgagtgtaaccctctgctgcc |
33110316 |
T |
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| Q |
101 |
aaccgagccttgtattgttctattgaaccattaacatgatatttgattttgtagacccatctgcaactaataggtaccttaccagcaggcaaatcagtca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33110315 |
aaccgagccttgtattgttctattgaaccattaacatgatatttgattttgtagacccatctgcaactaataggtaccttaccagcaggcaaatcagtca |
33110216 |
T |
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| Q |
201 |
aaatccaagtttcagactagtgtgaaatagcaaagacaaagtgtttgtgag |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33110215 |
aaatccaagtttcagactagtgtgaaatagcaaagacaaagtgtttgtgag |
33110165 |
T |
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Back To:
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Target: chr8 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 214
Target Start/End: Complemental strand, 33221972 - 33221785
Alignment:
| Q |
27 |
tagtgagttttgtaacaggattaaaagtatcaaaataattcactccttcttgttgagtgtaaccctctgctgccaaccgagccttgtattgttctattga |
126 |
Q |
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|||| ||||||| ||| || ||||||| |||||||| ||||||| |||||| ||||||| |||| || |||| | |||||||||||||||||| || |
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| T |
33221972 |
tagtaagttttgctacatgactaaaagtgtcaaaatagttcactcattcttgcagagtgtagccctttgacaccaaacaagccttgtattgttctatgga |
33221873 |
T |
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| Q |
127 |
accattaacatgatatttgattttgtagacccatctgcaactaataggtaccttaccagcaggcaaatcagtcaaaatccaagtttca |
214 |
Q |
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| T |
33221872 |
gccattagcatggtatttgattttgtaaacccatcttcaaccaataggtactttaccatcaggcacatcattcaaaatccaagtttca |
33221785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 212
Target Start/End: Original strand, 42778181 - 42778283
Alignment:
| Q |
110 |
ttgtattgttctattgaaccattaacatgatatttgattttgtagacccatctgcaactaataggtaccttaccagcaggcaaatcagtcaaaatccaag |
209 |
Q |
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||||| ||||||||||||| ||||||||| |||||||| ||||| | | |||| |||||||||| ||||||||||| ||||||||| |||||||||||| |
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| T |
42778181 |
ttgtaatgttctattgaactattaacatggtatttgatcttgtaaatctatctacaactaatagataccttaccagaaggcaaatctctcaaaatccaag |
42778280 |
T |
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| Q |
210 |
ttt |
212 |
Q |
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||| |
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| T |
42778281 |
ttt |
42778283 |
T |
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