View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8509_low_36 (Length: 248)
Name: NF8509_low_36
Description: NF8509
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8509_low_36 |
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| [»] scaffold0290 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 98 - 235
Target Start/End: Complemental strand, 9346904 - 9346767
Alignment:
| Q |
98 |
gaacgagcatagactaatatttaattaaaagtaaacaaattgattaaaaaataatttagaggtttgacgttgatttattaccagtcaaacgtgttagagg |
197 |
Q |
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| T |
9346904 |
gaacgagcgtagactaatatttaattaaaagtaaacaaattgattaaaaaataatttagcggtttgacgttgatttattaccagtcaaacgtgttagagg |
9346805 |
T |
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| Q |
198 |
acaaatattcatggaaatcaagtatgctagagaatgtt |
235 |
Q |
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| T |
9346804 |
acaaatattcatggaaatcaagtatgctagagaatgtt |
9346767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 9355350 - 9355281
Alignment:
| Q |
108 |
agactaatatttaattaaaagtaaacaaattgattaaaaaataatttag-aggtttgacgttgatttatt |
176 |
Q |
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| T |
9355350 |
agactaacatttaattaaaagtataaaatttgattaaaaaatcaattagtaggtttgacgttgatttatt |
9355281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 19438714 - 19438760
Alignment:
| Q |
175 |
ttaccagtcaaacgtgttagaggacaaatattcatggaaatcaagta |
221 |
Q |
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| T |
19438714 |
ttaccagtcaaacgtgtcagaggacaaatattcatggaaagcaagta |
19438760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 19574863 - 19574909
Alignment:
| Q |
175 |
ttaccagtcaaacgtgttagaggacaaatattcatggaaatcaagta |
221 |
Q |
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| T |
19574863 |
ttaccagtcaaacgtgtcagaggacaaatattcatggaaagcaagta |
19574909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 180 - 223
Target Start/End: Complemental strand, 23296376 - 23296333
Alignment:
| Q |
180 |
agtcaaacgtgttagaggacaaatattcatggaaatcaagtatg |
223 |
Q |
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| T |
23296376 |
agtcaaacgtgtgagaggacaaatattcacggaaatcaagtatg |
23296333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 4156 - 4204
Alignment:
| Q |
173 |
tattaccagtcaaacgtgttagaggacaaatattcatggaaatcaagta |
221 |
Q |
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| T |
4156 |
tattaccagtcgaacgtattagaggataagtattcatggaattcaagta |
4204 |
T |
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